Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC16.91■□□□□ 0.3
ERCC4Q92889 DOC2GP-202ENST00000514950 1163 ntBASIC16.91■□□□□ 0.3
ERCC4Q92889 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.91■□□□□ 0.3
ERCC4Q92889 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC16.91■□□□□ 0.3
ERCC4Q92889 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.91■□□□□ 0.3
ERCC4Q92889 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.91■□□□□ 0.3
ERCC4Q92889 AC036164.1-201ENST00000570544 333 ntBASIC16.91■□□□□ 0.3
ERCC4Q92889 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.91■□□□□ 0.3
ERCC4Q92889 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.91■□□□□ 0.3
ERCC4Q92889 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.91■□□□□ 0.3
ERCC4Q92889 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC16.91■□□□□ 0.3
ERCC4Q92889 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC16.91■□□□□ 0.3
ERCC4Q92889 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
ERCC4Q92889 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC16.91■□□□□ 0.3
ERCC4Q92889 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC16.91■□□□□ 0.3
ERCC4Q92889 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
ERCC4Q92889 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ERCC4Q92889 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC4Q92889 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC16.9■□□□□ 0.3
ERCC4Q92889 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC4Q92889 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
ERCC4Q92889 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC4Q92889 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC4Q92889 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.9■□□□□ 0.3
ERCC4Q92889 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC4Q92889 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC4Q92889 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC4Q92889 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC4Q92889 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC4Q92889 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
ERCC4Q92889 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
ERCC4Q92889 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC16.9■□□□□ 0.3
ERCC4Q92889 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.9■□□□□ 0.3
ERCC4Q92889 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.9■□□□□ 0.3
ERCC4Q92889 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.9■□□□□ 0.3
ERCC4Q92889 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
ERCC4Q92889 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.9■□□□□ 0.3
ERCC4Q92889 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC4Q92889 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
ERCC4Q92889 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC4Q92889 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
ERCC4Q92889 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC4Q92889 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC4Q92889 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC4Q92889 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC4Q92889 AC011474.4-201ENST00000623523 2076 ntBASIC16.9■□□□□ 0.3
ERCC4Q92889 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC16.9■□□□□ 0.3
ERCC4Q92889 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
ERCC4Q92889 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
ERCC4Q92889 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC16.9■□□□□ 0.3
ERCC4Q92889 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
ERCC4Q92889 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
ERCC4Q92889 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC16.9■□□□□ 0.3
ERCC4Q92889 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC4Q92889 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ERCC4Q92889 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
ERCC4Q92889 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
ERCC4Q92889 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
ERCC4Q92889 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ERCC4Q92889 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ERCC4Q92889 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
ERCC4Q92889 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC16.89■□□□□ 0.29
ERCC4Q92889 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
ERCC4Q92889 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ERCC4Q92889 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
ERCC4Q92889 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
ERCC4Q92889 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ERCC4Q92889 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
ERCC4Q92889 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ERCC4Q92889 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.89■□□□□ 0.29
ERCC4Q92889 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
ERCC4Q92889 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.89■□□□□ 0.29
ERCC4Q92889 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.89■□□□□ 0.29
ERCC4Q92889 AC026434.2-201ENST00000506094 1078 ntBASIC16.89■□□□□ 0.29
ERCC4Q92889 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.89■□□□□ 0.29
ERCC4Q92889 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC16.89■□□□□ 0.29
ERCC4Q92889 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ERCC4Q92889 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
ERCC4Q92889 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC16.89■□□□□ 0.29
ERCC4Q92889 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ERCC4Q92889 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
ERCC4Q92889 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
ERCC4Q92889 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC16.89■□□□□ 0.29
ERCC4Q92889 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
ERCC4Q92889 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ERCC4Q92889 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
ERCC4Q92889 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
ERCC4Q92889 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
ERCC4Q92889 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
ERCC4Q92889 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms