Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC13.41□□□□□ -0.26
SUMO3P55854 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC13.41□□□□□ -0.26
SUMO3P55854 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.41□□□□□ -0.26
SUMO3P55854 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
SUMO3P55854 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC13.41□□□□□ -0.26
SUMO3P55854 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC13.41□□□□□ -0.26
SUMO3P55854 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC13.41□□□□□ -0.26
SUMO3P55854 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13.41□□□□□ -0.26
SUMO3P55854 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
SUMO3P55854 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
SUMO3P55854 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
SUMO3P55854 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.41□□□□□ -0.26
SUMO3P55854 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
SUMO3P55854 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SUMO3P55854 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.4□□□□□ -0.26
SUMO3P55854 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
SUMO3P55854 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SUMO3P55854 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SUMO3P55854 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
SUMO3P55854 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SUMO3P55854 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC13.4□□□□□ -0.26
SUMO3P55854 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SUMO3P55854 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
SUMO3P55854 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SUMO3P55854 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC13.4□□□□□ -0.26
SUMO3P55854 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SUMO3P55854 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC13.4□□□□□ -0.26
SUMO3P55854 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC13.4□□□□□ -0.26
SUMO3P55854 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
SUMO3P55854 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SUMO3P55854 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SUMO3P55854 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SUMO3P55854 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC13.4□□□□□ -0.26
SUMO3P55854 GK-202ENST00000378941 458 ntTSL 3 BASIC13.4□□□□□ -0.26
SUMO3P55854 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.4□□□□□ -0.26
SUMO3P55854 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SUMO3P55854 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.4□□□□□ -0.26
SUMO3P55854 WBP2-203ENST00000433525 928 ntTSL 2 BASIC13.4□□□□□ -0.26
SUMO3P55854 CICP12-201ENST00000455801 843 ntBASIC13.4□□□□□ -0.26
SUMO3P55854 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC13.4□□□□□ -0.26
SUMO3P55854 SORD2P-201ENST00000558556 1069 ntBASIC13.4□□□□□ -0.26
SUMO3P55854 AC027237.1-201ENST00000560942 655 ntBASIC13.4□□□□□ -0.26
SUMO3P55854 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC13.4□□□□□ -0.26
SUMO3P55854 DUX4L46-201ENST00000566845 751 ntBASIC13.4□□□□□ -0.26
SUMO3P55854 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC13.4□□□□□ -0.26
SUMO3P55854 AC132192.2-201ENST00000596206 1147 ntBASIC13.4□□□□□ -0.26
SUMO3P55854 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC13.4□□□□□ -0.26
SUMO3P55854 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC13.4□□□□□ -0.26
SUMO3P55854 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
SUMO3P55854 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
SUMO3P55854 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
SUMO3P55854 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SUMO3P55854 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.4□□□□□ -0.26
SUMO3P55854 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
SUMO3P55854 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC13.4□□□□□ -0.26
SUMO3P55854 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SUMO3P55854 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.4□□□□□ -0.27
SUMO3P55854 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.39□□□□□ -0.27
SUMO3P55854 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC13.39□□□□□ -0.27
SUMO3P55854 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC13.39□□□□□ -0.27
SUMO3P55854 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC13.39□□□□□ -0.27
SUMO3P55854 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 BX640514.1-201ENST00000583223 1918 ntBASIC13.39□□□□□ -0.27
SUMO3P55854 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
SUMO3P55854 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
SUMO3P55854 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
SUMO3P55854 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
SUMO3P55854 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC13.39□□□□□ -0.27
SUMO3P55854 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
SUMO3P55854 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC13.39□□□□□ -0.27
SUMO3P55854 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC13.39□□□□□ -0.27
SUMO3P55854 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC13.39□□□□□ -0.27
SUMO3P55854 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SUMO3P55854 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.39□□□□□ -0.27
SUMO3P55854 AC010328.2-201ENST00000597698 1111 ntBASIC13.39□□□□□ -0.27
SUMO3P55854 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms