Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC008735.3-201ENST00000596646 500 ntBASIC14.47□□□□□ -0.09
HNF4AP41235 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.47□□□□□ -0.09
HNF4AP41235 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
HNF4AP41235 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.47□□□□□ -0.09
HNF4AP41235 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.47□□□□□ -0.09
HNF4AP41235 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.47□□□□□ -0.09
HNF4AP41235 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
HNF4AP41235 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
HNF4AP41235 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.47□□□□□ -0.09
HNF4AP41235 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
HNF4AP41235 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HNF4AP41235 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.47□□□□□ -0.09
HNF4AP41235 AL137784.3-201ENST00000623858 2288 ntBASIC14.46□□□□□ -0.09
HNF4AP41235 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.46□□□□□ -0.09
HNF4AP41235 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.46□□□□□ -0.09
HNF4AP41235 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
HNF4AP41235 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.46□□□□□ -0.09
HNF4AP41235 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.46□□□□□ -0.09
HNF4AP41235 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HNF4AP41235 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
HNF4AP41235 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC14.46□□□□□ -0.09
HNF4AP41235 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
HNF4AP41235 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
HNF4AP41235 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
HNF4AP41235 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HNF4AP41235 AL354702.1-201ENST00000442006 1960 ntBASIC14.46□□□□□ -0.09
HNF4AP41235 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HNF4AP41235 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
HNF4AP41235 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.46□□□□□ -0.09
HNF4AP41235 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HNF4AP41235 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HNF4AP41235 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HNF4AP41235 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC14.46□□□□□ -0.09
HNF4AP41235 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.46□□□□□ -0.09
HNF4AP41235 AC012441.1-201ENST00000446669 685 ntBASIC14.46□□□□□ -0.09
HNF4AP41235 AL355864.2-201ENST00000447420 863 ntBASIC14.46□□□□□ -0.09
HNF4AP41235 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC14.46□□□□□ -0.09
HNF4AP41235 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HNF4AP41235 AC106760.1-201ENST00000508690 800 ntBASIC14.46□□□□□ -0.09
HNF4AP41235 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HNF4AP41235 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HNF4AP41235 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.46□□□□□ -0.09
HNF4AP41235 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
HNF4AP41235 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
HNF4AP41235 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.46□□□□□ -0.09
HNF4AP41235 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.46□□□□□ -0.09
HNF4AP41235 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HNF4AP41235 AC145423.3-201ENST00000615987 467 ntBASIC14.46□□□□□ -0.09
HNF4AP41235 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.46□□□□□ -0.09
HNF4AP41235 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HNF4AP41235 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.46□□□□□ -0.09
HNF4AP41235 SALL4P5-201ENST00000419001 1760 ntBASIC14.46□□□□□ -0.09
HNF4AP41235 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.46□□□□□ -0.09
HNF4AP41235 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.46□□□□□ -0.09
HNF4AP41235 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
HNF4AP41235 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HNF4AP41235 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.46□□□□□ -0.09
HNF4AP41235 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HNF4AP41235 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HNF4AP41235 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.46□□□□□ -0.1
HNF4AP41235 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.46□□□□□ -0.1
HNF4AP41235 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
HNF4AP41235 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.46□□□□□ -0.1
HNF4AP41235 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.46□□□□□ -0.1
HNF4AP41235 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.45□□□□□ -0.1
HNF4AP41235 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
HNF4AP41235 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.45□□□□□ -0.1
HNF4AP41235 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.45□□□□□ -0.1
HNF4AP41235 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
HNF4AP41235 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
HNF4AP41235 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
HNF4AP41235 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HNF4AP41235 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HNF4AP41235 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
HNF4AP41235 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
HNF4AP41235 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HNF4AP41235 BX640514.1-201ENST00000583223 1918 ntBASIC14.45□□□□□ -0.1
HNF4AP41235 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HNF4AP41235 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HNF4AP41235 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HNF4AP41235 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
HNF4AP41235 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HNF4AP41235 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
HNF4AP41235 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HNF4AP41235 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.45□□□□□ -0.1
HNF4AP41235 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
HNF4AP41235 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
HNF4AP41235 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.45□□□□□ -0.1
HNF4AP41235 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms