Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HOXD3P31249 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
HOXD3P31249 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
HOXD3P31249 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
HOXD3P31249 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXD3P31249 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC11.52□□□□□ -0.57
HOXD3P31249 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXD3P31249 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXD3P31249 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXD3P31249 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HOXD3P31249 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXD3P31249 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HOXD3P31249 ELK2AP-201ENST00000392510 1007 ntBASIC11.52□□□□□ -0.57
HOXD3P31249 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXD3P31249 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC11.52□□□□□ -0.57
HOXD3P31249 TISP43-201ENST00000409793 538 ntTSL 4 BASIC11.52□□□□□ -0.57
HOXD3P31249 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXD3P31249 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC11.52□□□□□ -0.57
HOXD3P31249 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC11.52□□□□□ -0.57
HOXD3P31249 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXD3P31249 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC11.52□□□□□ -0.57
HOXD3P31249 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC11.52□□□□□ -0.57
HOXD3P31249 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC11.52□□□□□ -0.57
HOXD3P31249 AC079328.1-201ENST00000560358 952 ntBASIC11.52□□□□□ -0.57
HOXD3P31249 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC11.52□□□□□ -0.57
HOXD3P31249 NKG7-204ENST00000595217 816 ntTSL 2 BASIC11.52□□□□□ -0.57
HOXD3P31249 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC11.52□□□□□ -0.57
HOXD3P31249 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC11.52□□□□□ -0.57
HOXD3P31249 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC11.52□□□□□ -0.57
HOXD3P31249 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXD3P31249 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
HOXD3P31249 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
HOXD3P31249 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
HOXD3P31249 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
HOXD3P31249 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HOXD3P31249 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC11.52□□□□□ -0.57
HOXD3P31249 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC11.52□□□□□ -0.57
HOXD3P31249 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
HOXD3P31249 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXD3P31249 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
HOXD3P31249 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
HOXD3P31249 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
HOXD3P31249 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC11.51□□□□□ -0.57
HOXD3P31249 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC11.51□□□□□ -0.57
HOXD3P31249 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
HOXD3P31249 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC11.51□□□□□ -0.57
HOXD3P31249 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC11.51□□□□□ -0.57
HOXD3P31249 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC11.51□□□□□ -0.57
HOXD3P31249 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
HOXD3P31249 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
HOXD3P31249 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
HOXD3P31249 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
HOXD3P31249 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC11.51□□□□□ -0.57
HOXD3P31249 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC11.51□□□□□ -0.57
HOXD3P31249 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC11.51□□□□□ -0.57
HOXD3P31249 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC11.51□□□□□ -0.57
HOXD3P31249 EIF4HP1-201ENST00000453115 687 ntBASIC11.51□□□□□ -0.57
HOXD3P31249 REEP1-202ENST00000453231 940 ntTSL 2 BASIC11.51□□□□□ -0.57
HOXD3P31249 APOA2-204ENST00000464492 530 ntTSL 3 BASIC11.51□□□□□ -0.57
HOXD3P31249 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC11.51□□□□□ -0.57
HOXD3P31249 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC11.51□□□□□ -0.57
HOXD3P31249 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC11.51□□□□□ -0.57
HOXD3P31249 AL391280.1-201ENST00000506969 1062 ntBASIC11.51□□□□□ -0.57
HOXD3P31249 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC11.51□□□□□ -0.57
HOXD3P31249 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.57
HOXD3P31249 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC11.51□□□□□ -0.57
HOXD3P31249 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
HOXD3P31249 RNF41-210ENST00000552244 716 ntTSL 3 BASIC11.51□□□□□ -0.57
HOXD3P31249 AC106820.3-201ENST00000561653 397 ntBASIC11.51□□□□□ -0.57
HOXD3P31249 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC11.51□□□□□ -0.57
HOXD3P31249 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC11.51□□□□□ -0.57
HOXD3P31249 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC11.51□□□□□ -0.57
HOXD3P31249 RN7SL713P-201ENST00000582127 302 ntBASIC11.51□□□□□ -0.57
HOXD3P31249 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC11.51□□□□□ -0.57
HOXD3P31249 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC11.51□□□□□ -0.57
HOXD3P31249 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC11.51□□□□□ -0.57
HOXD3P31249 AC106872.11-201ENST00000605838 421 ntBASIC11.51□□□□□ -0.57
HOXD3P31249 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
HOXD3P31249 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC11.51□□□□□ -0.57
HOXD3P31249 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms