Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 AC063926.2-201ENST00000623766 1308 ntBASIC11.38□□□□□ -0.59
HLA-DMBP28068 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 AC087499.6-201ENST00000411576 835 ntBASIC11.38□□□□□ -0.59
HLA-DMBP28068 DFFBP1-201ENST00000433250 979 ntBASIC11.38□□□□□ -0.59
HLA-DMBP28068 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 TPT1P11-201ENST00000458482 498 ntBASIC11.38□□□□□ -0.59
HLA-DMBP28068 RN7SL692P-201ENST00000464677 288 ntBASIC11.38□□□□□ -0.59
HLA-DMBP28068 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 AP005018.1-201ENST00000525475 301 ntBASIC11.38□□□□□ -0.59
HLA-DMBP28068 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC11.38□□□□□ -0.59
HLA-DMBP28068 MIR8072-201ENST00000614241 80 ntBASIC11.38□□□□□ -0.59
HLA-DMBP28068 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 AC025048.6-201ENST00000634326 1161 ntBASIC11.38□□□□□ -0.59
HLA-DMBP28068 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 AC079781.5-202ENST00000641784 3743 ntBASIC11.38□□□□□ -0.59
HLA-DMBP28068 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
HLA-DMBP28068 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HLA-DMBP28068 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 AC012617.1-204ENST00000586340 2305 ntBASIC11.37□□□□□ -0.59
HLA-DMBP28068 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 GSAP-205ENST00000430584 600 ntTSL 5 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
HLA-DMBP28068 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 AC093004.1-201ENST00000508850 424 ntBASIC11.37□□□□□ -0.59
HLA-DMBP28068 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 CFL1-212ENST00000531413 636 ntTSL 3 BASIC11.37□□□□□ -0.59
HLA-DMBP28068 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC11.37□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms