Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC16.2■□□□□ 0.18
RFX1P22670 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX1P22670 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX1P22670 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
RFX1P22670 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC16.2■□□□□ 0.18
RFX1P22670 AL354702.1-201ENST00000442006 1960 ntBASIC16.2■□□□□ 0.18
RFX1P22670 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX1P22670 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX1P22670 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX1P22670 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
RFX1P22670 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
RFX1P22670 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
RFX1P22670 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX1P22670 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX1P22670 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFX1P22670 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
RFX1P22670 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC16.19■□□□□ 0.18
RFX1P22670 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 MX1-218ENST00000619682 1980 ntTSL 5 BASIC16.19■□□□□ 0.18
RFX1P22670 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
RFX1P22670 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
RFX1P22670 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 CALR4P-201ENST00000431943 946 ntBASIC16.19■□□□□ 0.18
RFX1P22670 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC16.19■□□□□ 0.18
RFX1P22670 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 OARD1-212ENST00000482515 832 ntTSL 2 BASIC16.19■□□□□ 0.18
RFX1P22670 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
RFX1P22670 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
RFX1P22670 AHRR-211ENST00000515206 462 ntTSL 5 BASIC16.19■□□□□ 0.18
RFX1P22670 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC16.19■□□□□ 0.18
RFX1P22670 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC16.19■□□□□ 0.18
RFX1P22670 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC16.19■□□□□ 0.18
RFX1P22670 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC16.19■□□□□ 0.18
RFX1P22670 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC16.19■□□□□ 0.18
RFX1P22670 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC16.19■□□□□ 0.18
RFX1P22670 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.19■□□□□ 0.18
RFX1P22670 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC16.19■□□□□ 0.18
RFX1P22670 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.19■□□□□ 0.18
RFX1P22670 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
RFX1P22670 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
RFX1P22670 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC16.19■□□□□ 0.18
RFX1P22670 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 GRK6P1-201ENST00000400595 1711 ntBASIC16.19■□□□□ 0.18
RFX1P22670 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
RFX1P22670 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
RFX1P22670 API5-203ENST00000455725 2257 ntTSL 2 BASIC16.19■□□□□ 0.18
RFX1P22670 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFX1P22670 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC16.18■□□□□ 0.18
RFX1P22670 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.18■□□□□ 0.18
RFX1P22670 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.18■□□□□ 0.18
RFX1P22670 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
RFX1P22670 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.18■□□□□ 0.18
RFX1P22670 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC16.18■□□□□ 0.18
RFX1P22670 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
RFX1P22670 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC16.18■□□□□ 0.18
RFX1P22670 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC16.18■□□□□ 0.18
RFX1P22670 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
RFX1P22670 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
RFX1P22670 STK33P1-201ENST00000423835 1218 ntBASIC16.18■□□□□ 0.18
RFX1P22670 AC007969.1-201ENST00000433675 447 ntBASIC16.18■□□□□ 0.18
RFX1P22670 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16.18■□□□□ 0.18
RFX1P22670 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
RFX1P22670 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC16.18■□□□□ 0.18
RFX1P22670 AC022137.2-201ENST00000503482 481 ntBASIC16.18■□□□□ 0.18
RFX1P22670 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC16.18■□□□□ 0.18
RFX1P22670 AC106760.1-201ENST00000508690 800 ntBASIC16.18■□□□□ 0.18
RFX1P22670 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC16.18■□□□□ 0.18
RFX1P22670 RNA5SP423-201ENST00000517127 109 ntBASIC16.18■□□□□ 0.18
RFX1P22670 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
RFX1P22670 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.18■□□□□ 0.18
RFX1P22670 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC16.18■□□□□ 0.18
RFX1P22670 AC106872.11-201ENST00000605838 421 ntBASIC16.18■□□□□ 0.18
RFX1P22670 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC16.18■□□□□ 0.18
RFX1P22670 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC16.18■□□□□ 0.18
RFX1P22670 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFX1P22670 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms