Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CACNA1FO60840 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CACNA1FO60840 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CACNA1FO60840 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CACNA1FO60840 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC18.26■□□□□ 0.51
CACNA1FO60840 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC18.26■□□□□ 0.51
CACNA1FO60840 RN7SL258P-201ENST00000478664 300 ntBASIC18.26■□□□□ 0.51
CACNA1FO60840 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CACNA1FO60840 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CACNA1FO60840 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1FO60840 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC18.25■□□□□ 0.51
CACNA1FO60840 AL022313.4-201ENST00000562756 2046 ntBASIC18.25■□□□□ 0.51
CACNA1FO60840 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC18.25■□□□□ 0.51
CACNA1FO60840 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1FO60840 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CACNA1FO60840 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1FO60840 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1FO60840 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1FO60840 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC18.25■□□□□ 0.51
CACNA1FO60840 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC18.25■□□□□ 0.51
CACNA1FO60840 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC18.25■□□□□ 0.51
CACNA1FO60840 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1FO60840 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1FO60840 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CACNA1FO60840 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC18.25■□□□□ 0.51
CACNA1FO60840 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
CACNA1FO60840 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1FO60840 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1FO60840 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1FO60840 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1FO60840 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1FO60840 SLC25A24P2-201ENST00000415059 510 ntBASIC18.25■□□□□ 0.51
CACNA1FO60840 SCARNA12-201ENST00000459155 270 ntBASIC18.25■□□□□ 0.51
CACNA1FO60840 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC18.25■□□□□ 0.51
CACNA1FO60840 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1FO60840 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC18.25■□□□□ 0.51
CACNA1FO60840 AC244452.3-201ENST00000636814 210 ntBASIC18.25■□□□□ 0.51
CACNA1FO60840 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1FO60840 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC18.25■□□□□ 0.51
CACNA1FO60840 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC18.25■□□□□ 0.51
CACNA1FO60840 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC18.25■□□□□ 0.51
CACNA1FO60840 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1FO60840 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1FO60840 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1FO60840 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CACNA1FO60840 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CACNA1FO60840 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC18.25■□□□□ 0.51
CACNA1FO60840 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC18.24■□□□□ 0.51
CACNA1FO60840 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1FO60840 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC18.24■□□□□ 0.51
CACNA1FO60840 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CACNA1FO60840 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1FO60840 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC18.24■□□□□ 0.51
CACNA1FO60840 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1FO60840 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1FO60840 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC18.24■□□□□ 0.51
CACNA1FO60840 RPSAP15-201ENST00000448168 861 ntBASIC18.24■□□□□ 0.51
CACNA1FO60840 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC18.24■□□□□ 0.51
CACNA1FO60840 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC18.24■□□□□ 0.51
CACNA1FO60840 AC114947.1-202ENST00000514136 344 ntBASIC18.24■□□□□ 0.51
CACNA1FO60840 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC18.24■□□□□ 0.51
CACNA1FO60840 AL512310.5-201ENST00000551999 515 ntBASIC18.24■□□□□ 0.51
CACNA1FO60840 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC18.24■□□□□ 0.51
CACNA1FO60840 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1FO60840 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC18.24■□□□□ 0.51
CACNA1FO60840 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1FO60840 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC18.24■□□□□ 0.51
CACNA1FO60840 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CACNA1FO60840 CICP16-201ENST00000502609 2813 ntBASIC18.24■□□□□ 0.51
CACNA1FO60840 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC18.24■□□□□ 0.51
CACNA1FO60840 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1FO60840 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CACNA1FO60840 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CACNA1FO60840 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC18.24■□□□□ 0.51
CACNA1FO60840 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1FO60840 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1FO60840 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC18.24■□□□□ 0.51
CACNA1FO60840 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1FO60840 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1FO60840 LINC00265-2P-201ENST00000413372 782 ntBASIC18.24■□□□□ 0.51
CACNA1FO60840 AC006987.1-201ENST00000413610 527 ntBASIC18.24■□□□□ 0.51
CACNA1FO60840 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC18.24■□□□□ 0.51
CACNA1FO60840 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CACNA1FO60840 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC18.24■□□□□ 0.51
CACNA1FO60840 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC18.24■□□□□ 0.51
CACNA1FO60840 AC015967.2-201ENST00000624092 234 ntBASIC18.24■□□□□ 0.51
CACNA1FO60840 AC006435.4-201ENST00000625037 234 ntBASIC18.24■□□□□ 0.51
CACNA1FO60840 AL356737.1-201ENST00000634391 234 ntBASIC18.24■□□□□ 0.51
CACNA1FO60840 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC18.24■□□□□ 0.51
CACNA1FO60840 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC18.24■□□□□ 0.51
CACNA1FO60840 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1FO60840 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1FO60840 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1FO60840 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1FO60840 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
CACNA1FO60840 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CACNA1FO60840 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CACNA1FO60840 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC18.23■□□□□ 0.51
CACNA1FO60840 AC090643.2-201ENST00000623442 2029 ntBASIC18.23■□□□□ 0.51
CACNA1FO60840 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms