Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CCDC39Q9UFE4 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 GAPDHP40-201ENST00000505218 1006 ntBASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC39Q9UFE4 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 AC130686.1-201ENST00000622936 2466 ntBASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 GNAQP1-201ENST00000444815 1067 ntBASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 TMPRSS11CP-201ENST00000453277 683 ntBASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 CD81-207ENST00000481687 890 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 AC104596.2-201ENST00000512793 793 ntBASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 AL049840.4-201ENST00000602422 811 ntBASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 DRD5P1-201ENST00000456605 1438 ntBASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
CCDC39Q9UFE4 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 MAPT-IT1-201ENST00000624111 3016 ntBASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms