Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 SNX12-206ENST00000622259 661 ntTSL 5 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 OR2I1P-210ENST00000642037 4691 ntBASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 AC004923.1-202ENST00000642106 209 ntBASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 AGAP7P-201ENST00000582299 2062 ntBASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 AGAP14-201ENST00000624701 2060 ntBASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 AC004899.1-201ENST00000424687 1714 ntBASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 API5-203ENST00000455725 2257 ntTSL 2 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 AC244394.1-201ENST00000435000 1665 ntBASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 RN7SL163P-201ENST00000583100 276 ntBASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 PCBP2-OT1-201ENST00000634357 590 ntBASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 AC068587.8-201ENST00000641239 219 ntBASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 AC092384.3-202ENST00000564646 2873 ntBASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CLCF1Q9UBD9 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CLCF1Q9UBD9 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC13.18□□□□□ -0.3
CLCF1Q9UBD9 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLCF1Q9UBD9 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLCF1Q9UBD9 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CLCF1Q9UBD9 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CLCF1Q9UBD9 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLCF1Q9UBD9 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CLCF1Q9UBD9 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms