Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 ECM1P1-201ENST00000604092 1279 ntBASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 FAM90A12P-201ENST00000519497 2375 ntBASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 FAM90A24P-201ENST00000520792 2369 ntBASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 NFIC-211ENST00000641145 8399 ntBASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 KRT8P28-201ENST00000433288 1390 ntBASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
RSPO3Q9BXY4 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 USP32P1-208ENST00000506594 1164 ntBASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RSPO3Q9BXY4 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 MGST3-203ENST00000367885 680 ntTSL 2 BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 GRAP-202ENST00000395635 834 ntTSL 2 BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 AC004945.1-201ENST00000416738 983 ntBASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 TMEM14DP-201ENST00000422205 345 ntBASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 PUDPP3-201ENST00000445368 636 ntBASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC13.56□□□□□ -0.24
RSPO3Q9BXY4 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms