Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LRCH3Q96II8 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LRCH3Q96II8 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LRCH3Q96II8 OR51A9P-201ENST00000422578 911 ntBASIC15.99■□□□□ 0.15
LRCH3Q96II8 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LRCH3Q96II8 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
LRCH3Q96II8 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC15.99■□□□□ 0.15
LRCH3Q96II8 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
LRCH3Q96II8 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC15.99■□□□□ 0.15
LRCH3Q96II8 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LRCH3Q96II8 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LRCH3Q96II8 KRT8P31-201ENST00000504812 1408 ntBASIC15.99■□□□□ 0.15
LRCH3Q96II8 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
LRCH3Q96II8 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
LRCH3Q96II8 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
LRCH3Q96II8 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LRCH3Q96II8 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
LRCH3Q96II8 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
LRCH3Q96II8 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
LRCH3Q96II8 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.99■□□□□ 0.15
LRCH3Q96II8 WASH7P-201ENST00000488147 1351 ntBASIC15.99■□□□□ 0.15
LRCH3Q96II8 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
LRCH3Q96II8 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC15.99■□□□□ 0.15
LRCH3Q96II8 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
LRCH3Q96II8 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
LRCH3Q96II8 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LRCH3Q96II8 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
LRCH3Q96II8 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LRCH3Q96II8 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LRCH3Q96II8 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LRCH3Q96II8 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
LRCH3Q96II8 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LRCH3Q96II8 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LRCH3Q96II8 IFNA1-201ENST00000276927 863 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 PTGER4P2-201ENST00000328411 252 ntBASIC15.98■□□□□ 0.15
LRCH3Q96II8 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LRCH3Q96II8 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LRCH3Q96II8 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 AC092580.1-201ENST00000433998 658 ntBASIC15.98■□□□□ 0.15
LRCH3Q96II8 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 PTGER4P3-201ENST00000458150 252 ntBASIC15.98■□□□□ 0.15
LRCH3Q96II8 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 AL136370.1-201ENST00000608166 691 ntBASIC15.98■□□□□ 0.15
LRCH3Q96II8 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 AC011462.4-201ENST00000616866 449 ntBASIC15.98■□□□□ 0.15
LRCH3Q96II8 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LRCH3Q96II8 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.98■□□□□ 0.15
LRCH3Q96II8 AC104640.1-201ENST00000562617 2109 ntBASIC15.98■□□□□ 0.15
LRCH3Q96II8 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LRCH3Q96II8 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LRCH3Q96II8 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
LRCH3Q96II8 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LRCH3Q96II8 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
LRCH3Q96II8 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
LRCH3Q96II8 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
LRCH3Q96II8 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LRCH3Q96II8 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LRCH3Q96II8 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LRCH3Q96II8 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
LRCH3Q96II8 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LRCH3Q96II8 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
LRCH3Q96II8 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LRCH3Q96II8 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.97■□□□□ 0.15
LRCH3Q96II8 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LRCH3Q96II8 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LRCH3Q96II8 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LRCH3Q96II8 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
LRCH3Q96II8 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LRCH3Q96II8 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LRCH3Q96II8 RPL14-203ENST00000416518 812 ntTSL 3 BASIC15.97■□□□□ 0.15
LRCH3Q96II8 ACTG1P19-201ENST00000418987 1116 ntBASIC15.97■□□□□ 0.15
LRCH3Q96II8 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC15.97■□□□□ 0.15
LRCH3Q96II8 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LRCH3Q96II8 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC15.97■□□□□ 0.15
LRCH3Q96II8 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.97■□□□□ 0.15
LRCH3Q96II8 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LRCH3Q96II8 AP002336.2-201ENST00000528607 539 ntTSL 5 BASIC15.97■□□□□ 0.15
LRCH3Q96II8 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LRCH3Q96II8 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LRCH3Q96II8 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC15.97■□□□□ 0.15
LRCH3Q96II8 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
LRCH3Q96II8 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC15.97■□□□□ 0.15
LRCH3Q96II8 AC002044.2-201ENST00000624910 970 ntBASIC15.97■□□□□ 0.15
LRCH3Q96II8 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
LRCH3Q96II8 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms