Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 LARP4-220ENST00000615080 856 ntTSL 5 BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 GPR182-203ENST00000622922 591 ntBASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 RHOXF1P1-202ENST00000635473 501 ntBASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 AL137783.1-201ENST00000623494 1896 ntBASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC17.79■□□□□ 0.44
CHMP4CQ96CF2 AC106881.1-201ENST00000605849 3329 ntBASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 NIN-202ENST00000324330 4364 ntTSL 5 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 ACTBP8-201ENST00000403258 1108 ntBASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 AHRR-211ENST00000515206 462 ntTSL 5 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 RPS15-202ENST00000585665 467 ntTSL 3 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 AC010328.2-201ENST00000597698 1111 ntBASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP4CQ96CF2 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 RPS15-201ENST00000233609 534 ntTSL 2 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 BRWD1P1-201ENST00000401091 371 ntBASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 MIR1908-201ENST00000410394 80 ntBASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 CNN2P8-201ENST00000421872 913 ntBASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 FAM21FP-201ENST00000426241 1131 ntBASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 RPS15-205ENST00000586686 562 ntTSL 5 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 RPS15-208ENST00000591804 711 ntTSL 5 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 TECR-220ENST00000600083 1204 ntTSL 2 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC17.77■□□□□ 0.44
CHMP4CQ96CF2 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms