Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP54Q70EL1 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.09■□□□□ 0.65
USP54Q70EL1 SAT1-201ENST00000379251 801 ntTSL 2 BASIC19.08■□□□□ 0.65
USP54Q70EL1 SAT1-202ENST00000379253 909 ntTSL 2 BASIC19.08■□□□□ 0.65
USP54Q70EL1 SAT1-203ENST00000379254 868 ntTSL 3 BASIC19.08■□□□□ 0.65
USP54Q70EL1 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP54Q70EL1 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC19.08■□□□□ 0.65
USP54Q70EL1 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP54Q70EL1 AREG-202ENST00000502307 956 ntTSL 5 BASIC19.08■□□□□ 0.65
USP54Q70EL1 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
USP54Q70EL1 F11R-204ENST00000537746 1245 ntTSL 2 BASIC19.08■□□□□ 0.65
USP54Q70EL1 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC19.08■□□□□ 0.65
USP54Q70EL1 AL512310.5-201ENST00000551999 515 ntBASIC19.08■□□□□ 0.65
USP54Q70EL1 DLK1-205ENST00000556051 469 ntTSL 2 BASIC19.08■□□□□ 0.65
USP54Q70EL1 RPS5-204ENST00000598098 536 ntTSL 2 BASIC19.08■□□□□ 0.65
USP54Q70EL1 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC19.08■□□□□ 0.65
USP54Q70EL1 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC19.08■□□□□ 0.65
USP54Q70EL1 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
USP54Q70EL1 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
USP54Q70EL1 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC19.08■□□□□ 0.65
USP54Q70EL1 TUBB8P4-201ENST00000511806 1324 ntBASIC19.08■□□□□ 0.65
USP54Q70EL1 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC19.08■□□□□ 0.65
USP54Q70EL1 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP54Q70EL1 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC19.08■□□□□ 0.64
USP54Q70EL1 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC19.08■□□□□ 0.64
USP54Q70EL1 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
USP54Q70EL1 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP54Q70EL1 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP54Q70EL1 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP54Q70EL1 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP54Q70EL1 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.64
USP54Q70EL1 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP54Q70EL1 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP54Q70EL1 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP54Q70EL1 GEMIN8P4-201ENST00000380526 729 ntBASIC19.08■□□□□ 0.64
USP54Q70EL1 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC19.08■□□□□ 0.64
USP54Q70EL1 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC19.08■□□□□ 0.64
USP54Q70EL1 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP54Q70EL1 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP54Q70EL1 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC19.07■□□□□ 0.64
USP54Q70EL1 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP54Q70EL1 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP54Q70EL1 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC19.07■□□□□ 0.64
USP54Q70EL1 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC19.07■□□□□ 0.64
USP54Q70EL1 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP54Q70EL1 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
USP54Q70EL1 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC19.07■□□□□ 0.64
USP54Q70EL1 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC19.07■□□□□ 0.64
USP54Q70EL1 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP54Q70EL1 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP54Q70EL1 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP54Q70EL1 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP54Q70EL1 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP54Q70EL1 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP54Q70EL1 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP54Q70EL1 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
USP54Q70EL1 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC19.07■□□□□ 0.64
USP54Q70EL1 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC19.07■□□□□ 0.64
USP54Q70EL1 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP54Q70EL1 AC024293.1-201ENST00000467930 498 ntBASIC19.07■□□□□ 0.64
USP54Q70EL1 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC19.07■□□□□ 0.64
USP54Q70EL1 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP54Q70EL1 AC006483.2-201ENST00000609813 515 ntBASIC19.07■□□□□ 0.64
USP54Q70EL1 AL031673.1-201ENST00000611460 466 ntBASIC19.07■□□□□ 0.64
USP54Q70EL1 AC138466.4-201ENST00000623965 852 ntBASIC19.07■□□□□ 0.64
USP54Q70EL1 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP54Q70EL1 MTHFR-210ENST00000641407 2387 ntBASIC19.07■□□□□ 0.64
USP54Q70EL1 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC19.07■□□□□ 0.64
USP54Q70EL1 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP54Q70EL1 FGD5P1-202ENST00000614866 2498 ntBASIC19.07■□□□□ 0.64
USP54Q70EL1 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP54Q70EL1 FES-204ENST00000414248 2327 ntTSL 2 BASIC19.06■□□□□ 0.64
USP54Q70EL1 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC19.06■□□□□ 0.64
USP54Q70EL1 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
USP54Q70EL1 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP54Q70EL1 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC19.06■□□□□ 0.64
USP54Q70EL1 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC19.06■□□□□ 0.64
USP54Q70EL1 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP54Q70EL1 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP54Q70EL1 AC007952.5-201ENST00000572818 1486 ntBASIC19.06■□□□□ 0.64
USP54Q70EL1 CICP14-201ENST00000629111 2732 ntBASIC19.06■□□□□ 0.64
USP54Q70EL1 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
USP54Q70EL1 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
USP54Q70EL1 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
USP54Q70EL1 AQP7P5-201ENST00000428759 1049 ntBASIC19.06■□□□□ 0.64
USP54Q70EL1 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP54Q70EL1 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC19.06■□□□□ 0.64
USP54Q70EL1 AQP7P4-201ENST00000447083 1042 ntBASIC19.06■□□□□ 0.64
USP54Q70EL1 AQP7P2-201ENST00000453967 1041 ntBASIC19.06■□□□□ 0.64
USP54Q70EL1 KRT18P15-201ENST00000458108 1291 ntBASIC19.06■□□□□ 0.64
USP54Q70EL1 PFN2-212ENST00000490975 858 ntTSL 4 BASIC19.06■□□□□ 0.64
USP54Q70EL1 KRT18P37-201ENST00000520711 1282 ntBASIC19.06■□□□□ 0.64
USP54Q70EL1 VENTXP3-201ENST00000546480 773 ntBASIC19.06■□□□□ 0.64
USP54Q70EL1 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC19.06■□□□□ 0.64
USP54Q70EL1 AQP7P3-201ENST00000624547 1041 ntBASIC19.06■□□□□ 0.64
USP54Q70EL1 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC19.06■□□□□ 0.64
USP54Q70EL1 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
USP54Q70EL1 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
USP54Q70EL1 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP54Q70EL1 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms