Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.35□□□□□ -0.11
PCDH1Q08174 AC106760.1-201ENST00000508690 800 ntBASIC14.35□□□□□ -0.11
PCDH1Q08174 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCDH1Q08174 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDH1Q08174 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDH1Q08174 SLC25A47P1-201ENST00000531577 414 ntBASIC14.35□□□□□ -0.11
PCDH1Q08174 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.35□□□□□ -0.11
PCDH1Q08174 LINC01551-203ENST00000550266 455 ntTSL 3 BASIC14.35□□□□□ -0.11
PCDH1Q08174 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.35□□□□□ -0.11
PCDH1Q08174 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
PCDH1Q08174 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.35□□□□□ -0.11
PCDH1Q08174 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.35□□□□□ -0.11
PCDH1Q08174 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.35□□□□□ -0.11
PCDH1Q08174 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDH1Q08174 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.35□□□□□ -0.11
PCDH1Q08174 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDH1Q08174 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCDH1Q08174 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCDH1Q08174 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.35□□□□□ -0.11
PCDH1Q08174 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDH1Q08174 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCDH1Q08174 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.35□□□□□ -0.11
PCDH1Q08174 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
PCDH1Q08174 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
PCDH1Q08174 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.35□□□□□ -0.11
PCDH1Q08174 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDH1Q08174 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDH1Q08174 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.35□□□□□ -0.11
PCDH1Q08174 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PCDH1Q08174 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
PCDH1Q08174 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PCDH1Q08174 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.35□□□□□ -0.11
PCDH1Q08174 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
PCDH1Q08174 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC14.34□□□□□ -0.11
PCDH1Q08174 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.34□□□□□ -0.11
PCDH1Q08174 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.34□□□□□ -0.11
PCDH1Q08174 AC090505.1-201ENST00000430515 1834 ntBASIC14.34□□□□□ -0.11
PCDH1Q08174 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.34□□□□□ -0.11
PCDH1Q08174 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.34□□□□□ -0.11
PCDH1Q08174 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
PCDH1Q08174 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
PCDH1Q08174 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 RN7SKP175-201ENST00000408472 289 ntBASIC14.34□□□□□ -0.11
PCDH1Q08174 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.34□□□□□ -0.11
PCDH1Q08174 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.34□□□□□ -0.11
PCDH1Q08174 AL355864.2-201ENST00000447420 863 ntBASIC14.34□□□□□ -0.11
PCDH1Q08174 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.34□□□□□ -0.11
PCDH1Q08174 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
PCDH1Q08174 RNA5SP486-201ENST00000515961 83 ntBASIC14.34□□□□□ -0.11
PCDH1Q08174 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.34□□□□□ -0.11
PCDH1Q08174 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
PCDH1Q08174 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.34□□□□□ -0.11
PCDH1Q08174 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.34□□□□□ -0.11
PCDH1Q08174 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.34□□□□□ -0.11
PCDH1Q08174 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.34□□□□□ -0.11
PCDH1Q08174 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.34□□□□□ -0.11
PCDH1Q08174 AC106820.3-201ENST00000561653 397 ntBASIC14.34□□□□□ -0.11
PCDH1Q08174 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.34□□□□□ -0.11
PCDH1Q08174 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.34□□□□□ -0.11
PCDH1Q08174 AC233724.13-201ENST00000598383 410 ntBASIC14.34□□□□□ -0.11
PCDH1Q08174 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
PCDH1Q08174 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.34□□□□□ -0.11
PCDH1Q08174 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.34□□□□□ -0.11
PCDH1Q08174 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.34□□□□□ -0.11
PCDH1Q08174 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.34□□□□□ -0.11
PCDH1Q08174 AC097359.2-201ENST00000604992 2389 ntBASIC14.34□□□□□ -0.11
PCDH1Q08174 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
PCDH1Q08174 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
PCDH1Q08174 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.34□□□□□ -0.11
PCDH1Q08174 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
PCDH1Q08174 FKBP4P6-201ENST00000457486 1332 ntBASIC14.34□□□□□ -0.11
PCDH1Q08174 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
PCDH1Q08174 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.34□□□□□ -0.11
PCDH1Q08174 AL590440.2-201ENST00000641973 1595 ntBASIC14.34□□□□□ -0.11
PCDH1Q08174 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.34□□□□□ -0.11
PCDH1Q08174 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
PCDH1Q08174 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
PCDH1Q08174 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms