Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 FKBP4P6-201ENST00000457486 1332 ntBASIC15.56■□□□□ 0.08
HDAC4P56524 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.56■□□□□ 0.08
HDAC4P56524 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HDAC4P56524 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
HDAC4P56524 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.56■□□□□ 0.08
HDAC4P56524 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
HDAC4P56524 AL137784.3-201ENST00000623858 2288 ntBASIC15.56■□□□□ 0.08
HDAC4P56524 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.56■□□□□ 0.08
HDAC4P56524 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HDAC4P56524 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HDAC4P56524 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HDAC4P56524 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HDAC4P56524 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
HDAC4P56524 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.55■□□□□ 0.08
HDAC4P56524 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.55■□□□□ 0.08
HDAC4P56524 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 AC009093.2-202ENST00000620513 2079 ntBASIC15.55■□□□□ 0.08
HDAC4P56524 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.55■□□□□ 0.08
HDAC4P56524 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC15.55■□□□□ 0.08
HDAC4P56524 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
HDAC4P56524 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
HDAC4P56524 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 AC005034.1-201ENST00000426657 489 ntBASIC15.55■□□□□ 0.08
HDAC4P56524 KRT43P-201ENST00000434019 910 ntBASIC15.55■□□□□ 0.08
HDAC4P56524 U91328.1-201ENST00000437528 223 ntBASIC15.55■□□□□ 0.08
HDAC4P56524 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
HDAC4P56524 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.55■□□□□ 0.08
HDAC4P56524 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC15.55■□□□□ 0.08
HDAC4P56524 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.55■□□□□ 0.08
HDAC4P56524 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC15.55■□□□□ 0.08
HDAC4P56524 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.55■□□□□ 0.08
HDAC4P56524 AC106886.1-201ENST00000568660 600 ntBASIC15.55■□□□□ 0.08
HDAC4P56524 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC15.55■□□□□ 0.08
HDAC4P56524 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.55■□□□□ 0.08
HDAC4P56524 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC15.55■□□□□ 0.08
HDAC4P56524 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC15.55■□□□□ 0.08
HDAC4P56524 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.55■□□□□ 0.08
HDAC4P56524 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
HDAC4P56524 AL035252.4-201ENST00000624174 288 ntBASIC15.55■□□□□ 0.08
HDAC4P56524 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.55■□□□□ 0.08
HDAC4P56524 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
HDAC4P56524 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.55■□□□□ 0.08
HDAC4P56524 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
HDAC4P56524 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
HDAC4P56524 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.55■□□□□ 0.08
HDAC4P56524 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC15.55■□□□□ 0.08
HDAC4P56524 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.55■□□□□ 0.08
HDAC4P56524 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.55■□□□□ 0.08
HDAC4P56524 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
HDAC4P56524 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC4P56524 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
HDAC4P56524 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC4P56524 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.54■□□□□ 0.08
HDAC4P56524 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.54■□□□□ 0.08
HDAC4P56524 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.54■□□□□ 0.08
HDAC4P56524 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC4P56524 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC4P56524 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC4P56524 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
HDAC4P56524 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC4P56524 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
HDAC4P56524 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
HDAC4P56524 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC4P56524 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC15.54■□□□□ 0.08
HDAC4P56524 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC4P56524 AP000593.2-201ENST00000542775 1433 ntBASIC15.54■□□□□ 0.08
HDAC4P56524 AC138969.2-201ENST00000532739 9932 ntBASIC15.54■□□□□ 0.08
HDAC4P56524 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
HDAC4P56524 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.54■□□□□ 0.08
HDAC4P56524 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC4P56524 AC139749.1-202ENST00000617529 3139 ntBASIC15.54■□□□□ 0.08
HDAC4P56524 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.54■□□□□ 0.08
HDAC4P56524 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC15.54■□□□□ 0.08
HDAC4P56524 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.54■□□□□ 0.08
HDAC4P56524 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.54■□□□□ 0.08
HDAC4P56524 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC4P56524 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
HDAC4P56524 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC4P56524 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
HDAC4P56524 AC079776.1-201ENST00000401540 1152 ntBASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms