Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
HOXA1P49639 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC12.45□□□□□ -0.42
HOXA1P49639 KRT18P32-201ENST00000424695 1287 ntBASIC12.45□□□□□ -0.42
HOXA1P49639 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC12.45□□□□□ -0.42
HOXA1P49639 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC12.45□□□□□ -0.42
HOXA1P49639 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC12.45□□□□□ -0.42
HOXA1P49639 AC011467.4-201ENST00000594891 528 ntBASIC12.45□□□□□ -0.42
HOXA1P49639 AC003101.2-201ENST00000612557 442 ntBASIC12.45□□□□□ -0.42
HOXA1P49639 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC12.45□□□□□ -0.42
HOXA1P49639 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
HOXA1P49639 AC007614.4-201ENST00000564048 1827 ntBASIC12.45□□□□□ -0.42
HOXA1P49639 ZHX2-201ENST00000314393 4624 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC12.45□□□□□ -0.42
HOXA1P49639 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
HOXA1P49639 GRIPAP1-207ENST00000593475 2908 ntTSL 5 BASIC12.45□□□□□ -0.42
HOXA1P49639 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC12.45□□□□□ -0.42
HOXA1P49639 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC12.45□□□□□ -0.42
HOXA1P49639 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC12.45□□□□□ -0.42
HOXA1P49639 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC12.45□□□□□ -0.42
HOXA1P49639 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC12.45□□□□□ -0.42
HOXA1P49639 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
HOXA1P49639 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
HOXA1P49639 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC12.45□□□□□ -0.42
HOXA1P49639 USP35-204ENST00000530267 2419 ntTSL 2 BASIC12.45□□□□□ -0.42
HOXA1P49639 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXA1P49639 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXA1P49639 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC12.44□□□□□ -0.42
HOXA1P49639 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXA1P49639 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
HOXA1P49639 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 REXO1L1P-201ENST00000379010 6598 ntBASIC12.44□□□□□ -0.42
HOXA1P49639 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXA1P49639 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC12.44□□□□□ -0.42
HOXA1P49639 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
HOXA1P49639 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
HOXA1P49639 PCDHGB8P-201ENST00000502926 1973 ntBASIC12.44□□□□□ -0.42
HOXA1P49639 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC12.44□□□□□ -0.42
HOXA1P49639 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 RBM39-205ENST00000397370 612 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXA1P49639 FO393414.2-201ENST00000405153 598 ntBASIC12.44□□□□□ -0.42
HOXA1P49639 MCCD1P2-201ENST00000423228 335 ntBASIC12.44□□□□□ -0.42
HOXA1P49639 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC12.44□□□□□ -0.42
HOXA1P49639 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXA1P49639 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC12.44□□□□□ -0.42
HOXA1P49639 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC12.44□□□□□ -0.42
HOXA1P49639 ALG1L8P-201ENST00000533887 760 ntBASIC12.44□□□□□ -0.42
HOXA1P49639 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXA1P49639 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC12.44□□□□□ -0.42
HOXA1P49639 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC12.44□□□□□ -0.42
HOXA1P49639 C20orf181-201ENST00000623918 480 ntBASIC12.44□□□□□ -0.42
HOXA1P49639 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
HOXA1P49639 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
HOXA1P49639 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 PCDHB17P-202ENST00000623466 3066 ntBASIC12.44□□□□□ -0.42
HOXA1P49639 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXA1P49639 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
HOXA1P49639 COL18A1-AS1-201ENST00000397787 3425 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
HOXA1P49639 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC12.44□□□□□ -0.42
HOXA1P49639 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
HOXA1P49639 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 MPZL2-201ENST00000278937 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
HOXA1P49639 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC12.43□□□□□ -0.42
HOXA1P49639 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
HOXA1P49639 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC12.43□□□□□ -0.42
HOXA1P49639 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
HOXA1P49639 TCAF2-205ENST00000444908 2976 ntTSL 5 BASIC12.43□□□□□ -0.42
HOXA1P49639 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms