Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
RFX3P48380 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.07□□□□□ -0.16
RFX3P48380 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 PTENP1-202ENST00000532280 3996 ntBASIC14.07□□□□□ -0.16
RFX3P48380 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.06□□□□□ -0.16
RFX3P48380 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
RFX3P48380 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
RFX3P48380 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
RFX3P48380 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.06□□□□□ -0.16
RFX3P48380 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC14.06□□□□□ -0.16
RFX3P48380 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.06□□□□□ -0.16
RFX3P48380 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
RFX3P48380 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
RFX3P48380 KLF2P2-201ENST00000416807 1039 ntBASIC14.06□□□□□ -0.16
RFX3P48380 HLA-K-203ENST00000430151 1046 ntBASIC14.06□□□□□ -0.16
RFX3P48380 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.06□□□□□ -0.16
RFX3P48380 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.06□□□□□ -0.16
RFX3P48380 KRT18P25-201ENST00000508931 1278 ntBASIC14.06□□□□□ -0.16
RFX3P48380 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 TDH-203ENST00000531764 1110 ntBASIC14.06□□□□□ -0.16
RFX3P48380 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.06□□□□□ -0.16
RFX3P48380 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.06□□□□□ -0.16
RFX3P48380 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
RFX3P48380 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.06□□□□□ -0.16
RFX3P48380 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 AC005912.2-201ENST00000619492 2400 ntBASIC14.06□□□□□ -0.16
RFX3P48380 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
RFX3P48380 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.06□□□□□ -0.16
RFX3P48380 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
RFX3P48380 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RFX3P48380 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC14.06□□□□□ -0.16
RFX3P48380 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.06□□□□□ -0.16
RFX3P48380 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.05□□□□□ -0.16
RFX3P48380 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
RFX3P48380 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC14.05□□□□□ -0.16
RFX3P48380 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
RFX3P48380 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
RFX3P48380 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
RFX3P48380 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.05□□□□□ -0.16
RFX3P48380 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
RFX3P48380 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.05□□□□□ -0.16
RFX3P48380 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.05□□□□□ -0.16
RFX3P48380 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
RFX3P48380 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.05□□□□□ -0.16
RFX3P48380 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.05□□□□□ -0.16
RFX3P48380 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.05□□□□□ -0.16
RFX3P48380 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC14.05□□□□□ -0.16
RFX3P48380 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.05□□□□□ -0.16
RFX3P48380 ENPP7P5-201ENST00000541031 1031 ntBASIC14.05□□□□□ -0.16
RFX3P48380 CLUHP6-201ENST00000580789 941 ntBASIC14.05□□□□□ -0.16
RFX3P48380 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
RFX3P48380 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.05□□□□□ -0.16
RFX3P48380 AC010319.3-201ENST00000597028 470 ntBASIC14.05□□□□□ -0.16
RFX3P48380 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC14.05□□□□□ -0.16
RFX3P48380 AC025048.6-201ENST00000634326 1161 ntBASIC14.05□□□□□ -0.16
RFX3P48380 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.05□□□□□ -0.16
RFX3P48380 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.05□□□□□ -0.16
RFX3P48380 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms