Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFC4P35249 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFC4P35249 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC18.4■□□□□ 0.54
RFC4P35249 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC18.4■□□□□ 0.54
RFC4P35249 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFC4P35249 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC18.4■□□□□ 0.54
RFC4P35249 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFC4P35249 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFC4P35249 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFC4P35249 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RFC4P35249 HCG27-204ENST00000424675 895 ntTSL 3 BASIC18.4■□□□□ 0.54
RFC4P35249 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC18.4■□□□□ 0.54
RFC4P35249 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC18.4■□□□□ 0.54
RFC4P35249 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC18.4■□□□□ 0.54
RFC4P35249 AC007952.4-201ENST00000573866 637 ntBASIC18.4■□□□□ 0.54
RFC4P35249 AC244250.3-201ENST00000620749 366 ntBASIC18.4■□□□□ 0.54
RFC4P35249 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFC4P35249 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFC4P35249 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFC4P35249 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RFC4P35249 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC18.4■□□□□ 0.54
RFC4P35249 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
RFC4P35249 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFC4P35249 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC18.4■□□□□ 0.54
RFC4P35249 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFC4P35249 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFC4P35249 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RFC4P35249 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RFC4P35249 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
RFC4P35249 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
RFC4P35249 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC18.39■□□□□ 0.54
RFC4P35249 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.39■□□□□ 0.53
RFC4P35249 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC18.39■□□□□ 0.53
RFC4P35249 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
RFC4P35249 C18orf15-201ENST00000623680 2534 ntBASIC18.39■□□□□ 0.53
RFC4P35249 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 ST13P19-201ENST00000442505 1124 ntBASIC18.39■□□□□ 0.53
RFC4P35249 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC18.39■□□□□ 0.53
RFC4P35249 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC18.39■□□□□ 0.53
RFC4P35249 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC18.39■□□□□ 0.53
RFC4P35249 MIR2392-201ENST00000584881 84 ntBASIC18.39■□□□□ 0.53
RFC4P35249 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC18.39■□□□□ 0.53
RFC4P35249 HKR1-225ENST00000592168 566 ntTSL 4 BASIC18.39■□□□□ 0.53
RFC4P35249 AC140113.1-201ENST00000603467 169 ntBASIC18.39■□□□□ 0.53
RFC4P35249 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
RFC4P35249 AC002472.4-201ENST00000641915 272 ntBASIC18.39■□□□□ 0.53
RFC4P35249 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC18.39■□□□□ 0.53
RFC4P35249 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 SSR4P1-203ENST00000599569 2260 ntBASIC18.39■□□□□ 0.53
RFC4P35249 AC092135.3-201ENST00000624151 1846 ntBASIC18.39■□□□□ 0.53
RFC4P35249 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
RFC4P35249 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC18.39■□□□□ 0.53
RFC4P35249 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 LINC01101-201ENST00000622953 1884 ntBASIC18.39■□□□□ 0.53
RFC4P35249 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 HYMAI-201ENST00000635591 3347 ntBASIC18.39■□□□□ 0.53
RFC4P35249 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC18.39■□□□□ 0.53
RFC4P35249 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 AL391005.1-201ENST00000623953 2435 ntBASIC18.39■□□□□ 0.53
RFC4P35249 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RFC4P35249 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFC4P35249 AP002353.1-201ENST00000528257 1599 ntBASIC18.38■□□□□ 0.53
RFC4P35249 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC18.38■□□□□ 0.53
RFC4P35249 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFC4P35249 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFC4P35249 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFC4P35249 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFC4P35249 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC18.38■□□□□ 0.53
RFC4P35249 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RFC4P35249 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RFC4P35249 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFC4P35249 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
RFC4P35249 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC18.38■□□□□ 0.53
RFC4P35249 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RFC4P35249 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC18.38■□□□□ 0.53
RFC4P35249 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC18.38■□□□□ 0.53
RFC4P35249 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC18.38■□□□□ 0.53
RFC4P35249 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RFC4P35249 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RFC4P35249 DRG2-220ENST00000583355 891 ntTSL 3 BASIC18.38■□□□□ 0.53
RFC4P35249 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC18.38■□□□□ 0.53
RFC4P35249 AC007250.1-201ENST00000608934 338 ntBASIC18.38■□□□□ 0.53
RFC4P35249 AC011471.3-201ENST00000623576 402 ntBASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms