Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
SLC6A4P31645 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SLC6A4P31645 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SLC6A4P31645 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SLC6A4P31645 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC15.18■□□□□ 0.02
SLC6A4P31645 AC139712.1-201ENST00000378256 1875 ntBASIC15.18■□□□□ 0.02
SLC6A4P31645 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
SLC6A4P31645 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.18■□□□□ 0.02
SLC6A4P31645 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC15.18■□□□□ 0.02
SLC6A4P31645 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.18■□□□□ 0.02
SLC6A4P31645 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC15.18■□□□□ 0.02
SLC6A4P31645 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
SLC6A4P31645 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.18■□□□□ 0.02
SLC6A4P31645 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.18■□□□□ 0.02
SLC6A4P31645 VDAC1P1-201ENST00000439229 848 ntBASIC15.18■□□□□ 0.02
SLC6A4P31645 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC15.18■□□□□ 0.02
SLC6A4P31645 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC15.18■□□□□ 0.02
SLC6A4P31645 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC15.18■□□□□ 0.02
SLC6A4P31645 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC15.18■□□□□ 0.02
SLC6A4P31645 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC15.18■□□□□ 0.02
SLC6A4P31645 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SLC6A4P31645 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
SLC6A4P31645 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC15.18■□□□□ 0.02
SLC6A4P31645 AC068587.8-201ENST00000641239 219 ntBASIC15.18■□□□□ 0.02
SLC6A4P31645 AC004923.1-202ENST00000642106 209 ntBASIC15.18■□□□□ 0.02
SLC6A4P31645 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
SLC6A4P31645 KRT8P28-201ENST00000433288 1390 ntBASIC15.18■□□□□ 0.02
SLC6A4P31645 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SLC6A4P31645 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.18■□□□□ 0.02
SLC6A4P31645 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
SLC6A4P31645 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
SLC6A4P31645 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.18■□□□□ 0.02
SLC6A4P31645 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
SLC6A4P31645 AL354702.1-201ENST00000442006 1960 ntBASIC15.18■□□□□ 0.02
SLC6A4P31645 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.18■□□□□ 0.02
SLC6A4P31645 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SLC6A4P31645 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC15.17■□□□□ 0.02
SLC6A4P31645 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
SLC6A4P31645 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
SLC6A4P31645 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SLC6A4P31645 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.17■□□□□ 0.02
SLC6A4P31645 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.17■□□□□ 0.02
SLC6A4P31645 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
SLC6A4P31645 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SLC6A4P31645 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.17■□□□□ 0.02
SLC6A4P31645 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC15.17■□□□□ 0.02
SLC6A4P31645 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SLC6A4P31645 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
SLC6A4P31645 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SLC6A4P31645 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
SLC6A4P31645 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SLC6A4P31645 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SLC6A4P31645 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.17■□□□□ 0.02
SLC6A4P31645 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC15.17■□□□□ 0.02
SLC6A4P31645 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SLC6A4P31645 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SLC6A4P31645 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SLC6A4P31645 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC15.17■□□□□ 0.02
SLC6A4P31645 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC15.17■□□□□ 0.02
SLC6A4P31645 CSH2-202ENST00000345366 598 ntTSL 5 BASIC15.17■□□□□ 0.02
SLC6A4P31645 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SLC6A4P31645 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SLC6A4P31645 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SLC6A4P31645 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SLC6A4P31645 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SLC6A4P31645 NPPA-201ENST00000376476 728 ntTSL 3 BASIC15.17■□□□□ 0.02
SLC6A4P31645 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC15.17■□□□□ 0.02
SLC6A4P31645 AC016700.1-201ENST00000429424 312 ntBASIC15.17■□□□□ 0.02
SLC6A4P31645 FNTAP2-201ENST00000430308 634 ntBASIC15.17■□□□□ 0.02
SLC6A4P31645 AL035414.1-201ENST00000451327 857 ntBASIC15.17■□□□□ 0.02
SLC6A4P31645 BX284668.4-201ENST00000453917 508 ntBASIC15.17■□□□□ 0.02
SLC6A4P31645 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SLC6A4P31645 AKR7A2P1-201ENST00000460134 915 ntBASIC15.17■□□□□ 0.02
SLC6A4P31645 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC15.17■□□□□ 0.02
SLC6A4P31645 ARTN-209ENST00000479128 471 ntTSL 3 BASIC15.17■□□□□ 0.02
SLC6A4P31645 HIST2H2BC-201ENST00000498492 580 ntBASIC15.17■□□□□ 0.02
SLC6A4P31645 NAT9-222ENST00000583476 583 ntTSL 3 BASIC15.17■□□□□ 0.02
SLC6A4P31645 AC103810.3-201ENST00000583567 96 ntBASIC15.17■□□□□ 0.02
SLC6A4P31645 AC244452.3-201ENST00000636814 210 ntBASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 166.7 ms