Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
ABCD3P28288 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCD3P28288 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
ABCD3P28288 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
ABCD3P28288 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCD3P28288 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCD3P28288 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCD3P28288 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.72□□□□□ -0.21
ABCD3P28288 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
ABCD3P28288 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.72□□□□□ -0.21
ABCD3P28288 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.72□□□□□ -0.21
ABCD3P28288 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCD3P28288 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCD3P28288 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCD3P28288 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.72□□□□□ -0.21
ABCD3P28288 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC13.72□□□□□ -0.21
ABCD3P28288 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCD3P28288 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ABCD3P28288 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC13.72□□□□□ -0.21
ABCD3P28288 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.72□□□□□ -0.21
ABCD3P28288 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
ABCD3P28288 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCD3P28288 AC092135.3-201ENST00000624151 1846 ntBASIC13.71□□□□□ -0.21
ABCD3P28288 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.71□□□□□ -0.21
ABCD3P28288 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC13.71□□□□□ -0.21
ABCD3P28288 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCD3P28288 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
ABCD3P28288 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCD3P28288 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCD3P28288 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCD3P28288 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCD3P28288 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCD3P28288 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ABCD3P28288 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
ABCD3P28288 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC13.71□□□□□ -0.21
ABCD3P28288 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
ABCD3P28288 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
ABCD3P28288 CHMP1AP1-201ENST00000445563 662 ntBASIC13.71□□□□□ -0.21
ABCD3P28288 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.71□□□□□ -0.21
ABCD3P28288 ALG3P1-201ENST00000508806 1114 ntBASIC13.71□□□□□ -0.21
ABCD3P28288 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC13.71□□□□□ -0.21
ABCD3P28288 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC13.71□□□□□ -0.21
ABCD3P28288 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.71□□□□□ -0.21
ABCD3P28288 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
ABCD3P28288 AL583810.1-201ENST00000553344 1045 ntBASIC13.71□□□□□ -0.21
ABCD3P28288 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.71□□□□□ -0.21
ABCD3P28288 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.71□□□□□ -0.21
ABCD3P28288 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC13.71□□□□□ -0.21
ABCD3P28288 BX088702.1-201ENST00000610784 235 ntBASIC13.71□□□□□ -0.21
ABCD3P28288 AC009542.2-202ENST00000619004 1067 ntBASIC13.71□□□□□ -0.21
ABCD3P28288 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
ABCD3P28288 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.71□□□□□ -0.21
ABCD3P28288 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
ABCD3P28288 AC106881.1-201ENST00000605849 3329 ntBASIC13.71□□□□□ -0.21
ABCD3P28288 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
ABCD3P28288 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
ABCD3P28288 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
ABCD3P28288 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.71□□□□□ -0.22
ABCD3P28288 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
ABCD3P28288 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
ABCD3P28288 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
ABCD3P28288 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
ABCD3P28288 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC13.71□□□□□ -0.22
ABCD3P28288 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.71□□□□□ -0.22
ABCD3P28288 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
ABCD3P28288 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
ABCD3P28288 AL136172.1-201ENST00000598590 1394 ntBASIC13.71□□□□□ -0.22
ABCD3P28288 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCD3P28288 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
ABCD3P28288 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.7□□□□□ -0.22
ABCD3P28288 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCD3P28288 AL023775.1-201ENST00000454907 1746 ntBASIC13.7□□□□□ -0.22
ABCD3P28288 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCD3P28288 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.7□□□□□ -0.22
ABCD3P28288 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
ABCD3P28288 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCD3P28288 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCD3P28288 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.7□□□□□ -0.22
ABCD3P28288 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCD3P28288 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCD3P28288 HIST2H2BB-201ENST00000449108 381 ntBASIC13.7□□□□□ -0.22
ABCD3P28288 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
ABCD3P28288 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
ABCD3P28288 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.7□□□□□ -0.22
ABCD3P28288 AL358472.3-201ENST00000608147 415 ntBASIC13.7□□□□□ -0.22
ABCD3P28288 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
ABCD3P28288 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
ABCD3P28288 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.7□□□□□ -0.22
ABCD3P28288 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
ABCD3P28288 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCD3P28288 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.7□□□□□ -0.22
ABCD3P28288 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCD3P28288 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC13.7□□□□□ -0.22
ABCD3P28288 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC13.7□□□□□ -0.22
ABCD3P28288 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ABCD3P28288 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.7□□□□□ -0.22
ABCD3P28288 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.7□□□□□ -0.22
ABCD3P28288 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC13.7□□□□□ -0.22
ABCD3P28288 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC13.7□□□□□ -0.22
ABCD3P28288 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms