Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
USF1P22415 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
USF1P22415 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC12.67□□□□□ -0.38
USF1P22415 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
USF1P22415 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC12.67□□□□□ -0.38
USF1P22415 ELK2AP-201ENST00000392510 1007 ntBASIC12.67□□□□□ -0.38
USF1P22415 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 EIF4HP1-201ENST00000453115 687 ntBASIC12.67□□□□□ -0.38
USF1P22415 RNA5SP423-201ENST00000517127 109 ntBASIC12.67□□□□□ -0.38
USF1P22415 NCK2-206ENST00000522586 490 ntTSL 5 BASIC12.67□□□□□ -0.38
USF1P22415 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC12.67□□□□□ -0.38
USF1P22415 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC12.67□□□□□ -0.38
USF1P22415 SAMD11P1-201ENST00000571429 661 ntBASIC12.67□□□□□ -0.38
USF1P22415 RN7SL190P-201ENST00000582519 257 ntBASIC12.67□□□□□ -0.38
USF1P22415 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC12.67□□□□□ -0.38
USF1P22415 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC12.67□□□□□ -0.38
USF1P22415 AL451050.2-201ENST00000606967 682 ntBASIC12.67□□□□□ -0.38
USF1P22415 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC12.67□□□□□ -0.38
USF1P22415 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC12.67□□□□□ -0.38
USF1P22415 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC12.67□□□□□ -0.38
USF1P22415 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 RETN-203ENST00000629642 400 ntTSL 5 BASIC12.67□□□□□ -0.38
USF1P22415 AL645728.2-202ENST00000641679 227 ntBASIC12.67□□□□□ -0.38
USF1P22415 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 AL731571.1-201ENST00000617058 5428 ntBASIC12.67□□□□□ -0.38
USF1P22415 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USF1P22415 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC12.67□□□□□ -0.38
USF1P22415 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC12.67□□□□□ -0.38
USF1P22415 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC12.66□□□□□ -0.38
USF1P22415 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC12.66□□□□□ -0.38
USF1P22415 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC12.66□□□□□ -0.38
USF1P22415 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
USF1P22415 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
USF1P22415 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
USF1P22415 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
USF1P22415 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
USF1P22415 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC12.66□□□□□ -0.38
USF1P22415 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
USF1P22415 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
USF1P22415 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
USF1P22415 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC12.66□□□□□ -0.38
USF1P22415 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
USF1P22415 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC12.66□□□□□ -0.38
USF1P22415 REEP1-202ENST00000453231 940 ntTSL 2 BASIC12.66□□□□□ -0.38
USF1P22415 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC12.66□□□□□ -0.38
USF1P22415 HIST2H2BC-201ENST00000498492 580 ntBASIC12.66□□□□□ -0.38
USF1P22415 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC12.66□□□□□ -0.38
USF1P22415 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC12.66□□□□□ -0.38
USF1P22415 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC12.66□□□□□ -0.38
USF1P22415 FOS-206ENST00000555347 1280 ntTSL 2 BASIC12.66□□□□□ -0.38
USF1P22415 KLK11-210ENST00000600362 759 ntTSL 3 BASIC12.66□□□□□ -0.38
USF1P22415 AC138649.2-201ENST00000615886 705 ntBASIC12.66□□□□□ -0.38
USF1P22415 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC12.66□□□□□ -0.38
USF1P22415 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC12.66□□□□□ -0.38
USF1P22415 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC12.66□□□□□ -0.38
USF1P22415 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
USF1P22415 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
USF1P22415 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
USF1P22415 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC12.66□□□□□ -0.38
USF1P22415 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
USF1P22415 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
USF1P22415 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
USF1P22415 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
USF1P22415 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
USF1P22415 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC12.65□□□□□ -0.38
USF1P22415 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC12.65□□□□□ -0.38
USF1P22415 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
USF1P22415 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
USF1P22415 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC12.65□□□□□ -0.38
USF1P22415 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC12.65□□□□□ -0.38
USF1P22415 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
USF1P22415 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC12.65□□□□□ -0.38
USF1P22415 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC12.65□□□□□ -0.38
USF1P22415 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
USF1P22415 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC12.65□□□□□ -0.38
USF1P22415 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC12.65□□□□□ -0.38
USF1P22415 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
USF1P22415 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC12.65□□□□□ -0.38
USF1P22415 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
USF1P22415 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
USF1P22415 MIR769-201ENST00000390225 118 ntBASIC12.65□□□□□ -0.38
USF1P22415 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC12.65□□□□□ -0.38
USF1P22415 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms