Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HMGA1P17096 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGA1P17096 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGA1P17096 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGA1P17096 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
HMGA1P17096 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HMGA1P17096 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGA1P17096 MPV17-204ENST00000399052 749 ntTSL 4 BASIC15.24■□□□□ 0.03
HMGA1P17096 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC15.24■□□□□ 0.03
HMGA1P17096 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC15.24■□□□□ 0.03
HMGA1P17096 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC15.24■□□□□ 0.03
HMGA1P17096 MIR6769A-201ENST00000617340 73 ntBASIC15.24■□□□□ 0.03
HMGA1P17096 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC15.24■□□□□ 0.03
HMGA1P17096 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.24■□□□□ 0.03
HMGA1P17096 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGA1P17096 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC15.24■□□□□ 0.03
HMGA1P17096 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.24■□□□□ 0.03
HMGA1P17096 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGA1P17096 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
HMGA1P17096 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC15.24■□□□□ 0.03
HMGA1P17096 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HMGA1P17096 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGA1P17096 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGA1P17096 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGA1P17096 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HMGA1P17096 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC15.24■□□□□ 0.03
HMGA1P17096 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.23■□□□□ 0.03
HMGA1P17096 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.23■□□□□ 0.03
HMGA1P17096 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.23■□□□□ 0.03
HMGA1P17096 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGA1P17096 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HMGA1P17096 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC15.23■□□□□ 0.03
HMGA1P17096 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGA1P17096 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.23■□□□□ 0.03
HMGA1P17096 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
HMGA1P17096 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.23■□□□□ 0.03
HMGA1P17096 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HMGA1P17096 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC15.23■□□□□ 0.03
HMGA1P17096 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC15.23■□□□□ 0.03
HMGA1P17096 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HMGA1P17096 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC15.23■□□□□ 0.03
HMGA1P17096 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGA1P17096 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HMGA1P17096 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
HMGA1P17096 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC15.23■□□□□ 0.03
HMGA1P17096 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HMGA1P17096 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC15.23■□□□□ 0.03
HMGA1P17096 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC15.23■□□□□ 0.03
HMGA1P17096 TMEM198B-204ENST00000484016 896 ntBASIC15.23■□□□□ 0.03
HMGA1P17096 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HMGA1P17096 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC15.23■□□□□ 0.03
HMGA1P17096 IGLV3-15-201ENST00000518356 244 ntBASIC15.23■□□□□ 0.03
HMGA1P17096 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGA1P17096 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGA1P17096 AC027237.1-201ENST00000560942 655 ntBASIC15.23■□□□□ 0.03
HMGA1P17096 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC15.23■□□□□ 0.03
HMGA1P17096 AC124068.2-201ENST00000569473 1109 ntBASIC15.23■□□□□ 0.03
HMGA1P17096 PHBP15-201ENST00000574228 665 ntBASIC15.23■□□□□ 0.03
HMGA1P17096 MIR4706-201ENST00000582134 82 ntBASIC15.23■□□□□ 0.03
HMGA1P17096 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC15.23■□□□□ 0.03
HMGA1P17096 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGA1P17096 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.23■□□□□ 0.03
HMGA1P17096 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGA1P17096 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
HMGA1P17096 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC15.23■□□□□ 0.03
HMGA1P17096 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC15.23■□□□□ 0.03
HMGA1P17096 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGA1P17096 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGA1P17096 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGA1P17096 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
HMGA1P17096 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGA1P17096 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HMGA1P17096 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
HMGA1P17096 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGA1P17096 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.22■□□□□ 0.03
HMGA1P17096 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGA1P17096 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HMGA1P17096 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HMGA1P17096 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.22■□□□□ 0.03
HMGA1P17096 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGA1P17096 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGA1P17096 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
HMGA1P17096 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGA1P17096 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
HMGA1P17096 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HMGA1P17096 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC15.22■□□□□ 0.03
HMGA1P17096 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC15.22■□□□□ 0.03
HMGA1P17096 AC026320.2-201ENST00000434379 478 ntBASIC15.22■□□□□ 0.03
HMGA1P17096 FTLP1-201ENST00000449155 526 ntBASIC15.22■□□□□ 0.03
HMGA1P17096 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC15.22■□□□□ 0.03
HMGA1P17096 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC15.22■□□□□ 0.03
HMGA1P17096 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC15.22■□□□□ 0.03
HMGA1P17096 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.22■□□□□ 0.03
HMGA1P17096 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGA1P17096 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.22■□□□□ 0.03
HMGA1P17096 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.22■□□□□ 0.03
HMGA1P17096 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGA1P17096 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HMGA1P17096 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.22■□□□□ 0.03
HMGA1P17096 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms