Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CLNS1A-204ENST00000525428 2993 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.555e-7■□□□□ 9.2
YBX3P16989 CLNS1A-205ENST00000526009 747 ntTSL 310.68□□□□□ -0.75e-7■□□□□ 9.2
YBX3P16989 IDI1-202ENST00000427898 441 ntTSL 210.41□□□□□ -0.745e-7■□□□□ 9.2
YBX3P16989 GDI1-214ENST00000491154 4069 ntTSL 210□□□□□ -0.815e-7■□□□□ 9.2
YBX3P16989 CLNS1A-206ENST00000526761 415 ntTSL 39.54□□□□□ -0.885e-7■□□□□ 9.2
YBX3P16989 FAM208B-202ENST00000380270 738 ntTSL 36.37□□□□□ -1.395e-7■□□□□ 9.2
YBX3P16989 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.155e-10■□□□□ 9.2
YBX3P16989 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.15e-10■□□□□ 9.2
YBX3P16989 HSPA8-203ENST00000524552 963 ntTSL 1 (best)14.43□□□□□ -0.19e-16■□□□□ 9.2
YBX3P16989 PABPC1-211ENST00000519596 771 ntTSL 34.85□□□□□ -1.633e-49■□□□□ 9.2
YBX3P16989 CRLF1-203ENST00000594325 1020 ntTSL 329.88■■■□□ 2.374e-6■□□□□ 9.2
YBX3P16989 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.254e-6■□□□□ 9.2
YBX3P16989 CRLF1-204ENST00000596360 413 ntTSL 220.69■□□□□ 0.94e-6■□□□□ 9.2
YBX3P16989 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC26.82■■□□□ 1.882e-22■□□□□ 9.2
YBX3P16989 RPS23-202ENST00000503605 595 ntTSL 323.89■■□□□ 1.412e-22■□□□□ 9.2
YBX3P16989 RPS23-204ENST00000507980 836 ntTSL 2 BASIC18.32■□□□□ 0.522e-22■□□□□ 9.2
YBX3P16989 RPS23-205ENST00000510019 1019 ntTSL 4 BASIC16.72■□□□□ 0.272e-22■□□□□ 9.2
YBX3P16989 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.042e-22■□□□□ 9.2
YBX3P16989 RPS23-203ENST00000504293 576 ntTSL 1 (best)10.48□□□□□ -0.732e-22■□□□□ 9.2
YBX3P16989 RPS23-208ENST00000512493 443 ntTSL 3 BASIC10.21□□□□□ -0.772e-22■□□□□ 9.2
YBX3P16989 GLUL-211ENST00000489818 683 ntTSL 314.19□□□□□ -0.145e-12■□□□□ 9.2
YBX3P16989 GLUL-208ENST00000475808 868 ntTSL 212.01□□□□□ -0.495e-12■□□□□ 9.2
YBX3P16989 GLUL-209ENST00000480604 908 ntTSL 510.89□□□□□ -0.675e-12■□□□□ 9.2
YBX3P16989 UBE2E3-207ENST00000602499 744 ntTSL 227.6■■■□□ 2.013e-7■□□□□ 9.2
YBX3P16989 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC7.55□□□□□ -1.21e-7■□□□□ 9.2
YBX3P16989 MRPL42-207ENST00000551396 725 ntTSL 56.86□□□□□ -1.311e-7■□□□□ 9.2
YBX3P16989 MRPL42-209ENST00000552326 567 ntTSL 46.47□□□□□ -1.371e-7■□□□□ 9.2
YBX3P16989 MRPL42-205ENST00000549561 775 ntTSL 36.05□□□□□ -1.441e-7■□□□□ 9.2
YBX3P16989 MRPL42-201ENST00000358678 2105 ntTSL 1 (best)5.65□□□□□ -1.51e-7■□□□□ 9.2
YBX3P16989 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC5.08□□□□□ -1.61e-7■□□□□ 9.2
YBX3P16989 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.721e-7■□□□□ 9.2
YBX3P16989 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.055e-10■□□□□ 9.2
YBX3P16989 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.045e-10■□□□□ 9.2
YBX3P16989 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.975e-10■□□□□ 9.2
YBX3P16989 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.815e-10■□□□□ 9.2
YBX3P16989 CIZ1-201ENST00000277465 2742 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.275e-10■□□□□ 9.2
YBX3P16989 CIZ1-205ENST00000372948 2858 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.315e-10■□□□□ 9.2
YBX3P16989 CIZ1-228ENST00000634901 3462 ntAPPRIS P3 TSL 5 BASIC12.94□□□□□ -0.345e-10■□□□□ 9.2
YBX3P16989 CIZ1-207ENST00000393608 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.445e-10■□□□□ 9.2
YBX3P16989 CIZ1-225ENST00000538431 2996 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.535e-10■□□□□ 9.2
YBX3P16989 CIZ1-208ENST00000415526 2508 ntAPPRIS ALT2 TSL 1 (best)11.46□□□□□ -0.575e-10■□□□□ 9.2
YBX3P16989 PPP4C-213ENST00000568810 1080 ntTSL 233.05■■■□□ 2.886e-9■□□□□ 9.2
YBX3P16989 CAB39-205ENST00000484398 552 ntTSL 411.17□□□□□ -0.627e-8■□□□□ 9.2
YBX3P16989 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.127e-14■□□□□ 9.2
YBX3P16989 NDUFS3-204ENST00000525378 779 ntTSL 216.18■□□□□ 0.187e-14■□□□□ 9.2
YBX3P16989 NDUFS3-203ENST00000525212 530 ntTSL 28.25□□□□□ -1.097e-14■□□□□ 9.2
YBX3P16989 TMEM54-205ENST00000475208 768 ntTSL 1 (best)34.43■■■■□ 3.13e-6■□□□□ 9.2
YBX3P16989 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC31.78■■■□□ 2.683e-6■□□□□ 9.2
YBX3P16989 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.033e-6■□□□□ 9.2
YBX3P16989 TMEM54-204ENST00000474144 748 ntTSL 326.62■■□□□ 1.853e-6■□□□□ 9.2
YBX3P16989 COTL1-206ENST00000567786 531 ntTSL 315.54■□□□□ 0.082e-16■□□□□ 9.2
YBX3P16989 TMEM54-203ENST00000463914 606 ntTSL 514.33□□□□□ -0.123e-6■□□□□ 9.2
YBX3P16989 NRDC-206ENST00000473805 1013 ntTSL 37.7□□□□□ -1.185e-11■□□□□ 9.2
YBX3P16989 ALDH2-201ENST00000261733 9569 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.764e-7■□□□□ 9.2
YBX3P16989 POLR1D-214ENST00000636226 100 ntTSL 52.95□□□□□ -1.947e-12■□□□□ 9.2
YBX3P16989 CCNC-218ENST00000524049 759 ntTSL 516.25■□□□□ 0.193e-7■□□□□ 9.2
YBX3P16989 CCNC-206ENST00000486428 849 ntTSL 38.18□□□□□ -1.13e-7■□□□□ 9.2
YBX3P16989 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.622e-8■□□□□ 9.2
YBX3P16989 BOLA3-203ENST00000469676 1436 ntTSL 523.33■■□□□ 1.332e-8■□□□□ 9.2
YBX3P16989 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC20.48■□□□□ 0.872e-8■□□□□ 9.2
YBX3P16989 BOLA3-205ENST00000484655 2982 ntTSL 1 (best)18.85■□□□□ 0.612e-8■□□□□ 9.2
YBX3P16989 MYC-208ENST00000641036 567 ntBASIC25.27■■□□□ 1.643e-8■□□□□ 9.2
YBX3P16989 MYC-204ENST00000520751 577 ntTSL 325.05■■□□□ 1.63e-8■□□□□ 9.2
YBX3P16989 MYC-203ENST00000517291 1023 ntTSL 1 (best)20.12■□□□□ 0.813e-8■□□□□ 9.2
YBX3P16989 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.36■□□□□ 0.693e-8■□□□□ 9.2
YBX3P16989 RNF24-202ENST00000358395 3242 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.387e-12■□□□□ 9.2
YBX3P16989 RNF24-203ENST00000432261 3149 ntTSL 5 BASIC8.02□□□□□ -1.137e-12■□□□□ 9.2
YBX3P16989 TMEM123-204ENST00000526676 467 ntTSL 421.69■■□□□ 1.063e-9■□□□□ 9.2
YBX3P16989 EPB41-212ENST00000490308 354 ntTSL 33.09□□□□□ -1.915e-13■□□□□ 9.2
YBX3P16989 TLN1-203ENST00000464379 814 ntTSL 317.34■□□□□ 0.375e-8■□□□□ 9.2
YBX3P16989 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.954e-6■□□□□ 9.2
YBX3P16989 POMP-202ENST00000460403 1428 ntTSL 3 BASIC7.61□□□□□ -1.194e-6■□□□□ 9.2
YBX3P16989 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.485e-7■□□□□ 9.2
YBX3P16989 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC17.76■□□□□ 0.435e-7■□□□□ 9.2
YBX3P16989 LIMS1-204ENST00000409441 1627 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.225e-7■□□□□ 9.2
YBX3P16989 LIMS1-205ENST00000410093 1526 ntTSL 1 (best) BASIC15.8■□□□□ 0.125e-7■□□□□ 9.2
YBX3P16989 HMBS-204ENST00000534956 547 ntTSL 56.08□□□□□ -1.442e-9■□□□□ 9.2
YBX3P16989 DLEU1-219ENST00000476738 838 ntTSL 5 BASIC15.15■□□□□ 0.021e-6■□□□□ 9.2
YBX3P16989 DLEU1-203ENST00000461527 917 ntTSL 1 (best) BASIC14.96□□□□□ -0.011e-6■□□□□ 9.2
YBX3P16989 DLEU1-208ENST00000468168 982 ntTSL 1 (best) BASIC14.7□□□□□ -0.061e-6■□□□□ 9.2
YBX3P16989 DLEU1-232ENST00000491341 1141 ntTSL 5 BASIC14.04□□□□□ -0.161e-6■□□□□ 9.2
YBX3P16989 DLEU1-207ENST00000467721 1455 ntTSL 5 BASIC13.56□□□□□ -0.241e-6■□□□□ 9.2
YBX3P16989 DLEU1-209ENST00000468522 1158 ntTSL 5 BASIC13.3□□□□□ -0.281e-6■□□□□ 9.2
YBX3P16989 DLEU1-201ENST00000378180 981 ntTSL 1 (best) BASIC13.07□□□□□ -0.321e-6■□□□□ 9.2
YBX3P16989 DLEU1-229ENST00000486895 481 ntTSL 1 (best) BASIC13.07□□□□□ -0.321e-6■□□□□ 9.2
YBX3P16989 DLEU1-206ENST00000463474 1048 ntTSL 1 (best) BASIC12.56□□□□□ -0.41e-6■□□□□ 9.2
YBX3P16989 DLEU1-231ENST00000490577 2440 ntTSL 5 BASIC12.17□□□□□ -0.461e-6■□□□□ 9.2
YBX3P16989 DLEU1-234ENST00000491615 1451 ntTSL 5 BASIC10.75□□□□□ -0.691e-6■□□□□ 9.2
YBX3P16989 DLEU1-212ENST00000469754 2955 ntTSL 1 (best) BASIC9.79□□□□□ -0.841e-6■□□□□ 9.2
YBX3P16989 LDHA-208ENST00000469976 656 ntTSL 211.91□□□□□ -0.51e-39■□□□□ 9.2
YBX3P16989 SEPT9-229ENST00000590576 583 ntTSL 326.89■■□□□ 1.94e-9■□□□□ 9.2
YBX3P16989 SEPT9-230ENST00000590586 572 ntTSL 426.89■■□□□ 1.94e-9■□□□□ 9.2
YBX3P16989 SEPT9-223ENST00000589140 552 ntTSL 426.42■■□□□ 1.824e-9■□□□□ 9.2
YBX3P16989 SEPT9-241ENST00000591934 553 ntTSL 423.61■■□□□ 1.374e-9■□□□□ 9.2
YBX3P16989 STX3-206ENST00000533637 1024 ntTSL 222.32■■□□□ 1.164e-9■□□□□ 9.2
YBX3P16989 SEPT9-231ENST00000590595 569 ntTSL 321.7■■□□□ 1.062e-10■□□□□ 9.2
YBX3P16989 STX3-205ENST00000530498 690 ntTSL 221.29■■□□□ 14e-9■□□□□ 9.2
YBX3P16989 STX3-203ENST00000529177 1571 ntTSL 2 BASIC21.04■□□□□ 0.964e-9■□□□□ 9.2
YBX3P16989 SEPT9-232ENST00000590825 554 ntTSL 418.6■□□□□ 0.574e-9■□□□□ 9.2
YBX3P16989 SEPT9-242ENST00000592098 503 ntTSL 416.99■□□□□ 0.314e-9■□□□□ 9.2
Retrieved 100 of 29,075 protein–RNA pairs in 112 ms