Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VCANP13611 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC14.92□□□□□ -0.02
VCANP13611 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VCANP13611 CYCS-203ENST00000409764 799 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
VCANP13611 AP002856.3-201ENST00000441665 635 ntTSL 3 BASIC14.92□□□□□ -0.02
VCANP13611 SNRPD2P2-201ENST00000473818 333 ntBASIC14.92□□□□□ -0.02
VCANP13611 DPY19L2P4-201ENST00000479881 442 ntBASIC14.92□□□□□ -0.02
VCANP13611 THEG-204ENST00000530711 1162 ntAPPRIS ALT2 TSL 3 BASIC14.92□□□□□ -0.02
VCANP13611 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC14.92□□□□□ -0.02
VCANP13611 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC14.92□□□□□ -0.02
VCANP13611 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
VCANP13611 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
VCANP13611 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC14.92□□□□□ -0.02
VCANP13611 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
VCANP13611 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
VCANP13611 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
VCANP13611 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
VCANP13611 U73169.1-201ENST00000395152 367 ntBASIC14.91□□□□□ -0.02
VCANP13611 LINC01833-204ENST00000444871 581 ntTSL 3 BASIC14.91□□□□□ -0.02
VCANP13611 RNF7-205ENST00000480908 782 ntTSL 4 BASIC14.91□□□□□ -0.02
VCANP13611 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC14.91□□□□□ -0.02
VCANP13611 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC14.91□□□□□ -0.02
VCANP13611 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
VCANP13611 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.91□□□□□ -0.02
VCANP13611 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VCANP13611 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC14.91□□□□□ -0.02
VCANP13611 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.91□□□□□ -0.02
VCANP13611 VGLL1-201ENST00000370634 1215 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VCANP13611 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VCANP13611 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC14.91□□□□□ -0.02
VCANP13611 AP000533.1-201ENST00000456143 1177 ntBASIC14.91□□□□□ -0.02
VCANP13611 RN7SL788P-201ENST00000460504 316 ntBASIC14.91□□□□□ -0.02
VCANP13611 RN7SL767P-201ENST00000493013 295 ntBASIC14.91□□□□□ -0.02
VCANP13611 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC14.91□□□□□ -0.02
VCANP13611 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC14.91□□□□□ -0.02
VCANP13611 AC106782.5-201ENST00000616011 337 ntBASIC14.91□□□□□ -0.02
VCANP13611 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.91□□□□□ -0.02
VCANP13611 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
VCANP13611 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
VCANP13611 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VCANP13611 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VCANP13611 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
VCANP13611 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.91□□□□□ -0.02
VCANP13611 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC14.91□□□□□ -0.02
VCANP13611 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.91□□□□□ -0.02
VCANP13611 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VCANP13611 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.91□□□□□ -0.02
VCANP13611 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC14.91□□□□□ -0.02
VCANP13611 MIR611-201ENST00000384869 67 ntBASIC14.91□□□□□ -0.02
VCANP13611 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC14.91□□□□□ -0.02
VCANP13611 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VCANP13611 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VCANP13611 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC14.91□□□□□ -0.02
VCANP13611 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.91□□□□□ -0.02
VCANP13611 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.91□□□□□ -0.02
VCANP13611 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VCANP13611 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC14.91□□□□□ -0.02
VCANP13611 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
VCANP13611 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 SOD1-202ENST00000389995 865 ntTSL 3 BASIC14.9□□□□□ -0.02
VCANP13611 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
VCANP13611 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 AC009517.1-201ENST00000454750 570 ntBASIC14.9□□□□□ -0.02
VCANP13611 CDC37P2-201ENST00000562287 1029 ntBASIC14.9□□□□□ -0.02
VCANP13611 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC14.9□□□□□ -0.02
VCANP13611 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC14.9□□□□□ -0.02
VCANP13611 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
VCANP13611 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.9□□□□□ -0.02
VCANP13611 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.9□□□□□ -0.02
VCANP13611 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.9□□□□□ -0.02
VCANP13611 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
VCANP13611 AC124067.4-201ENST00000519691 2379 ntBASIC14.9□□□□□ -0.02
VCANP13611 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.9□□□□□ -0.02
VCANP13611 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC14.9□□□□□ -0.02
VCANP13611 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC14.9□□□□□ -0.02
VCANP13611 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC14.9□□□□□ -0.02
VCANP13611 MIR6819-201ENST00000622122 61 ntBASIC14.9□□□□□ -0.02
VCANP13611 AC027601.3-201ENST00000622907 509 ntBASIC14.9□□□□□ -0.02
VCANP13611 LUC7L3-223ENST00000625349 408 ntTSL 2 BASIC14.9□□□□□ -0.02
VCANP13611 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC14.9□□□□□ -0.02
VCANP13611 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
VCANP13611 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
VCANP13611 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.9□□□□□ -0.02
VCANP13611 AP002353.1-201ENST00000528257 1599 ntBASIC14.9□□□□□ -0.02
VCANP13611 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VCANP13611 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC14.9□□□□□ -0.02
VCANP13611 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms