Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
TPM1P09493 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
TPM1P09493 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC16.47■□□□□ 0.23
TPM1P09493 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 PPT1-213ENST00000641319 2388 ntBASIC16.47■□□□□ 0.23
TPM1P09493 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC16.47■□□□□ 0.23
TPM1P09493 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.47■□□□□ 0.23
TPM1P09493 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.47■□□□□ 0.23
TPM1P09493 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.47■□□□□ 0.23
TPM1P09493 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.47■□□□□ 0.23
TPM1P09493 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.47■□□□□ 0.23
TPM1P09493 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.47■□□□□ 0.23
TPM1P09493 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.47■□□□□ 0.23
TPM1P09493 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.47■□□□□ 0.23
TPM1P09493 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.47■□□□□ 0.23
TPM1P09493 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.47■□□□□ 0.23
TPM1P09493 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.47■□□□□ 0.23
TPM1P09493 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.47■□□□□ 0.23
TPM1P09493 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.47■□□□□ 0.23
TPM1P09493 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.47■□□□□ 0.23
TPM1P09493 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.47■□□□□ 0.23
TPM1P09493 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC16.47■□□□□ 0.23
TPM1P09493 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
TPM1P09493 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC16.47■□□□□ 0.23
TPM1P09493 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC16.47■□□□□ 0.23
TPM1P09493 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC16.47■□□□□ 0.23
TPM1P09493 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC16.47■□□□□ 0.23
TPM1P09493 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TPM1P09493 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
TPM1P09493 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.47■□□□□ 0.23
TPM1P09493 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
TPM1P09493 PCDHA5-203ENST00000614258 4248 ntBASIC16.46■□□□□ 0.23
TPM1P09493 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC16.46■□□□□ 0.23
TPM1P09493 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 AC099521.3-201ENST00000624251 2938 ntBASIC16.46■□□□□ 0.23
TPM1P09493 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC16.46■□□□□ 0.23
TPM1P09493 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 AL137783.1-201ENST00000623494 1896 ntBASIC16.46■□□□□ 0.23
TPM1P09493 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
TPM1P09493 TP73-211ENST00000604074 4806 ntTSL 5 BASIC16.46■□□□□ 0.23
TPM1P09493 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC16.46■□□□□ 0.23
TPM1P09493 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC16.46■□□□□ 0.23
TPM1P09493 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
TPM1P09493 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC16.46■□□□□ 0.23
TPM1P09493 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
TPM1P09493 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC16.46■□□□□ 0.23
TPM1P09493 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
TPM1P09493 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.46■□□□□ 0.23
TPM1P09493 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.46■□□□□ 0.23
TPM1P09493 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC16.46■□□□□ 0.23
TPM1P09493 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC16.46■□□□□ 0.23
TPM1P09493 AL512356.2-201ENST00000546955 174 ntBASIC16.46■□□□□ 0.23
TPM1P09493 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
TPM1P09493 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC16.46■□□□□ 0.23
TPM1P09493 AC010336.2-201ENST00000564226 506 ntBASIC16.46■□□□□ 0.23
TPM1P09493 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.46■□□□□ 0.23
TPM1P09493 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 TEX28P1-201ENST00000613479 1221 ntBASIC16.46■□□□□ 0.23
TPM1P09493 TEX28P2-201ENST00000617764 1221 ntBASIC16.46■□□□□ 0.23
TPM1P09493 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.46■□□□□ 0.23
TPM1P09493 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
TPM1P09493 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
TPM1P09493 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC16.46■□□□□ 0.23
TPM1P09493 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TPM1P09493 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
TPM1P09493 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
TPM1P09493 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
TPM1P09493 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms