Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
APOEP02649 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
APOEP02649 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.63■□□□□ 0.09
APOEP02649 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
APOEP02649 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
APOEP02649 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.63■□□□□ 0.09
APOEP02649 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
APOEP02649 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
APOEP02649 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
APOEP02649 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.63■□□□□ 0.09
APOEP02649 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.63■□□□□ 0.09
APOEP02649 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.62■□□□□ 0.09
APOEP02649 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.62■□□□□ 0.09
APOEP02649 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.62■□□□□ 0.09
APOEP02649 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC15.62■□□□□ 0.09
APOEP02649 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
APOEP02649 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.62■□□□□ 0.09
APOEP02649 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
APOEP02649 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 AC099336.1-201ENST00000417053 1171 ntBASIC15.62■□□□□ 0.09
APOEP02649 AC026954.1-201ENST00000429771 1293 ntBASIC15.62■□□□□ 0.09
APOEP02649 FAM8A4P-201ENST00000435433 1213 ntBASIC15.62■□□□□ 0.09
APOEP02649 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.62■□□□□ 0.09
APOEP02649 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 YBX1P6-201ENST00000442962 1002 ntBASIC15.62■□□□□ 0.09
APOEP02649 FTLP10-202ENST00000505798 471 ntBASIC15.62■□□□□ 0.09
APOEP02649 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.62■□□□□ 0.09
APOEP02649 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 AC004466.1-201ENST00000599515 1080 ntBASIC15.62■□□□□ 0.09
APOEP02649 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.62■□□□□ 0.09
APOEP02649 AC138466.3-201ENST00000619983 221 ntBASIC15.62■□□□□ 0.09
APOEP02649 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.62■□□□□ 0.09
APOEP02649 AC008687.7-202ENST00000637404 953 ntBASIC15.62■□□□□ 0.09
APOEP02649 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
APOEP02649 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
APOEP02649 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 CLUHP2-201ENST00000426660 1303 ntBASIC15.62■□□□□ 0.09
APOEP02649 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC15.62■□□□□ 0.09
APOEP02649 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.62■□□□□ 0.09
APOEP02649 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
APOEP02649 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC15.62■□□□□ 0.09
APOEP02649 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC15.62■□□□□ 0.09
APOEP02649 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOEP02649 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC15.62■□□□□ 0.09
APOEP02649 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.61■□□□□ 0.09
APOEP02649 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
APOEP02649 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
APOEP02649 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
APOEP02649 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC15.61■□□□□ 0.09
APOEP02649 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
APOEP02649 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.61■□□□□ 0.09
APOEP02649 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
APOEP02649 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
APOEP02649 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
APOEP02649 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC15.61■□□□□ 0.09
APOEP02649 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
APOEP02649 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.61■□□□□ 0.09
APOEP02649 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
APOEP02649 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
APOEP02649 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
APOEP02649 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
APOEP02649 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
APOEP02649 FAM21FP-201ENST00000426241 1131 ntBASIC15.61■□□□□ 0.09
APOEP02649 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC15.61■□□□□ 0.09
APOEP02649 CSF2RBP1-201ENST00000447905 391 ntBASIC15.61■□□□□ 0.09
APOEP02649 MESTP3-201ENST00000503460 968 ntBASIC15.61■□□□□ 0.09
APOEP02649 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.61■□□□□ 0.09
APOEP02649 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
APOEP02649 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
APOEP02649 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.61■□□□□ 0.09
APOEP02649 NAA38-206ENST00000576384 424 ntTSL 2 BASIC15.61■□□□□ 0.09
APOEP02649 MIR4259-201ENST00000584466 101 ntBASIC15.61■□□□□ 0.09
APOEP02649 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.61■□□□□ 0.09
APOEP02649 MIR6752-201ENST00000618442 71 ntBASIC15.61■□□□□ 0.09
APOEP02649 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.61■□□□□ 0.09
APOEP02649 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
APOEP02649 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC15.61■□□□□ 0.09
APOEP02649 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms