Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CCDC188H7C350 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC15.48■□□□□ 0.07
CCDC188H7C350 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC15.48■□□□□ 0.07
CCDC188H7C350 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC15.48■□□□□ 0.07
CCDC188H7C350 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CCDC188H7C350 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC15.48■□□□□ 0.07
CCDC188H7C350 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CCDC188H7C350 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.48■□□□□ 0.07
CCDC188H7C350 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CCDC188H7C350 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CCDC188H7C350 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.48■□□□□ 0.07
CCDC188H7C350 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CCDC188H7C350 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC15.48■□□□□ 0.07
CCDC188H7C350 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.48■□□□□ 0.07
CCDC188H7C350 SERF2-209ENST00000409646 559 ntTSL 4 BASIC15.48■□□□□ 0.07
CCDC188H7C350 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC15.48■□□□□ 0.07
CCDC188H7C350 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.48■□□□□ 0.07
CCDC188H7C350 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.48■□□□□ 0.07
CCDC188H7C350 CNN2P2-201ENST00000443536 909 ntBASIC15.48■□□□□ 0.07
CCDC188H7C350 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CCDC188H7C350 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.48■□□□□ 0.07
CCDC188H7C350 CNN2P3-201ENST00000450201 906 ntBASIC15.48■□□□□ 0.07
CCDC188H7C350 FAM86LP-201ENST00000478302 853 ntBASIC15.48■□□□□ 0.07
CCDC188H7C350 HLA-J-203ENST00000494367 1087 ntBASIC15.48■□□□□ 0.07
CCDC188H7C350 DAD1-205ENST00000543337 501 ntTSL 3 BASIC15.48■□□□□ 0.07
CCDC188H7C350 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.48■□□□□ 0.07
CCDC188H7C350 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC15.48■□□□□ 0.07
CCDC188H7C350 AC036164.1-201ENST00000570544 333 ntBASIC15.48■□□□□ 0.07
CCDC188H7C350 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.48■□□□□ 0.07
CCDC188H7C350 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.48■□□□□ 0.07
CCDC188H7C350 AL049840.4-201ENST00000602422 811 ntBASIC15.48■□□□□ 0.07
CCDC188H7C350 AL136317.3-201ENST00000618497 906 ntBASIC15.48■□□□□ 0.07
CCDC188H7C350 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.48■□□□□ 0.07
CCDC188H7C350 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.48■□□□□ 0.07
CCDC188H7C350 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CCDC188H7C350 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CCDC188H7C350 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
CCDC188H7C350 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CCDC188H7C350 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
CCDC188H7C350 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
CCDC188H7C350 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC15.48■□□□□ 0.07
CCDC188H7C350 GALC-206ENST00000544807 2528 ntTSL 2 BASIC15.48■□□□□ 0.07
CCDC188H7C350 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CCDC188H7C350 AC011498.7-201ENST00000624986 2027 ntBASIC15.48■□□□□ 0.07
CCDC188H7C350 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CCDC188H7C350 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CCDC188H7C350 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
CCDC188H7C350 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 ADAMTS7P1-201ENST00000613213 4793 ntBASIC15.47■□□□□ 0.07
CCDC188H7C350 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
CCDC188H7C350 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC15.47■□□□□ 0.07
CCDC188H7C350 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC15.47■□□□□ 0.07
CCDC188H7C350 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
CCDC188H7C350 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.47■□□□□ 0.07
CCDC188H7C350 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.47■□□□□ 0.07
CCDC188H7C350 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC15.47■□□□□ 0.07
CCDC188H7C350 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.47■□□□□ 0.07
CCDC188H7C350 KRT18P13-201ENST00000400056 1290 ntBASIC15.47■□□□□ 0.07
CCDC188H7C350 AL022342.1-201ENST00000400363 863 ntBASIC15.47■□□□□ 0.07
CCDC188H7C350 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.47■□□□□ 0.07
CCDC188H7C350 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.47■□□□□ 0.07
CCDC188H7C350 AC112482.1-201ENST00000492080 688 ntBASIC15.47■□□□□ 0.07
CCDC188H7C350 AC026434.2-201ENST00000506094 1078 ntBASIC15.47■□□□□ 0.07
CCDC188H7C350 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC15.47■□□□□ 0.07
CCDC188H7C350 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
CCDC188H7C350 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.47■□□□□ 0.07
CCDC188H7C350 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.47■□□□□ 0.07
CCDC188H7C350 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.47■□□□□ 0.07
CCDC188H7C350 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.47■□□□□ 0.07
CCDC188H7C350 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
CCDC188H7C350 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC15.47■□□□□ 0.07
CCDC188H7C350 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
CCDC188H7C350 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CCDC188H7C350 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
CCDC188H7C350 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms