Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 AC007292.2-201ENST00000593524 1812 ntBASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
CLCF1Q9UBD9 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 AC023824.1-201ENST00000562945 2975 ntBASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 LINC01101-201ENST00000622953 1884 ntBASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 DPM3-202ENST00000368399 517 ntBASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 AC016700.1-201ENST00000429424 312 ntBASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 FNTAP2-201ENST00000430308 634 ntBASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 PUDPP3-201ENST00000445368 636 ntBASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 AC106794.1-201ENST00000506935 792 ntBASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 AC005740.2-201ENST00000511085 419 ntBASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.29
CLCF1Q9UBD9 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CLCF1Q9UBD9 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
CLCF1Q9UBD9 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
CLCF1Q9UBD9 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
CLCF1Q9UBD9 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CLCF1Q9UBD9 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CLCF1Q9UBD9 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
CLCF1Q9UBD9 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
CLCF1Q9UBD9 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
CLCF1Q9UBD9 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 EIF4HP1-201ENST00000453115 687 ntBASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 CICP12-201ENST00000455801 843 ntBASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 HIST2H2BC-201ENST00000498492 580 ntBASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 ACTG1P17-201ENST00000558391 1119 ntBASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 EID1-202ENST00000560490 584 ntTSL 3 BASIC13.2□□□□□ -0.3
CLCF1Q9UBD9 AC013355.1-201ENST00000562625 723 ntBASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms