Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC14.53□□□□□ -0.08
CCDC28BQ9BUN5 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28BQ9BUN5 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28BQ9BUN5 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28BQ9BUN5 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
CCDC28BQ9BUN5 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28BQ9BUN5 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28BQ9BUN5 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28BQ9BUN5 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
CCDC28BQ9BUN5 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
CCDC28BQ9BUN5 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28BQ9BUN5 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28BQ9BUN5 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28BQ9BUN5 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28BQ9BUN5 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
CCDC28BQ9BUN5 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CCDC28BQ9BUN5 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
CCDC28BQ9BUN5 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
CCDC28BQ9BUN5 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28BQ9BUN5 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC14.52□□□□□ -0.09
CCDC28BQ9BUN5 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC14.52□□□□□ -0.09
CCDC28BQ9BUN5 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.52□□□□□ -0.09
CCDC28BQ9BUN5 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28BQ9BUN5 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28BQ9BUN5 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28BQ9BUN5 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
CCDC28BQ9BUN5 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.52□□□□□ -0.09
CCDC28BQ9BUN5 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.52□□□□□ -0.09
CCDC28BQ9BUN5 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28BQ9BUN5 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
CCDC28BQ9BUN5 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28BQ9BUN5 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
CCDC28BQ9BUN5 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28BQ9BUN5 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CCDC28BQ9BUN5 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
CCDC28BQ9BUN5 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 TIMM17BP1-201ENST00000545713 516 ntBASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 AC092337.1-201ENST00000568699 1129 ntBASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 SPDYE12P-201ENST00000618416 771 ntBASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
CCDC28BQ9BUN5 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms