Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
SYNGAP1Q96PV0 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
SYNGAP1Q96PV0 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SYNGAP1Q96PV0 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SYNGAP1Q96PV0 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SYNGAP1Q96PV0 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SYNGAP1Q96PV0 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
SYNGAP1Q96PV0 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
SYNGAP1Q96PV0 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 AC092978.1-202ENST00000637590 1327 ntBASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 CCNC-217ENST00000523985 958 ntTSL 2 BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 CFL1-214ENST00000534769 758 ntTSL 2 BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 RTN3P1-201ENST00000536295 711 ntBASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 AC012044.1-201ENST00000603431 297 ntBASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 MIR6720-201ENST00000611664 98 ntBASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 AMT-204ENST00000427987 1646 ntTSL 5 BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC16.84■□□□□ 0.29
SYNGAP1Q96PV0 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
SYNGAP1Q96PV0 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SYNGAP1Q96PV0 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.83■□□□□ 0.29
SYNGAP1Q96PV0 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC16.83■□□□□ 0.29
SYNGAP1Q96PV0 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
SYNGAP1Q96PV0 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.83■□□□□ 0.29
SYNGAP1Q96PV0 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
SYNGAP1Q96PV0 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SYNGAP1Q96PV0 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
SYNGAP1Q96PV0 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
SYNGAP1Q96PV0 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.29
SYNGAP1Q96PV0 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SYNGAP1Q96PV0 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 AC067930.6-201ENST00000623257 4947 ntBASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 RPL17P11-201ENST00000417593 544 ntBASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 AC078875.1-201ENST00000431907 724 ntBASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 SKA2-202ENST00000437036 625 ntTSL 2 BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 AC019193.1-201ENST00000506678 823 ntBASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 SCARNA21-201ENST00000517026 139 ntBASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 IRF3-215ENST00000596822 823 ntTSL 3 BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 AC018635.2-201ENST00000608625 364 ntBASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 BX088702.1-201ENST00000610784 235 ntBASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SYNGAP1Q96PV0 WASH3P-207ENST00000560956 1394 ntBASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms