Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CHFRQ96EP1 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC15.06■□□□□ 0
CHFRQ96EP1 KRT18P36-201ENST00000411618 1276 ntBASIC15.06■□□□□ 0
CHFRQ96EP1 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.06■□□□□ 0
CHFRQ96EP1 RN7SL258P-201ENST00000478664 300 ntBASIC15.06■□□□□ 0
CHFRQ96EP1 RN7SL67P-201ENST00000492147 296 ntBASIC15.06■□□□□ 0
CHFRQ96EP1 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC15.06■□□□□ 0
CHFRQ96EP1 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC15.06■□□□□ 0
CHFRQ96EP1 MIR3677-201ENST00000578964 60 ntBASIC15.06■□□□□ 0
CHFRQ96EP1 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC15.06■□□□□ 0
CHFRQ96EP1 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.06■□□□□ 0
CHFRQ96EP1 HPN-206ENST00000597419 1212 ntTSL 5 BASIC15.06■□□□□ 0
CHFRQ96EP1 MIR6842-201ENST00000612539 65 ntBASIC15.06■□□□□ 0
CHFRQ96EP1 AC011491.1-203ENST00000637688 543 ntBASIC15.06■□□□□ 0
CHFRQ96EP1 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC15.06■□□□□ 0
CHFRQ96EP1 AL805961.1-201ENST00000642026 753 ntBASIC15.06■□□□□ 0
CHFRQ96EP1 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.06■□□□□ 0
CHFRQ96EP1 AC063926.3-201ENST00000624734 5658 ntBASIC15.06■□□□□ 0
CHFRQ96EP1 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CHFRQ96EP1 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CHFRQ96EP1 CAP2P1-201ENST00000557743 1390 ntBASIC15.06■□□□□ 0
CHFRQ96EP1 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.06■□□□□ 0
CHFRQ96EP1 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.06■□□□□ 0
CHFRQ96EP1 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.06■□□□□ 0
CHFRQ96EP1 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC15.06■□□□□ 0
CHFRQ96EP1 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CHFRQ96EP1 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CHFRQ96EP1 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.05■□□□□ 0
CHFRQ96EP1 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.05■□□□□ 0
CHFRQ96EP1 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.05■□□□□ 0
CHFRQ96EP1 AC126177.1-201ENST00000547829 2218 ntBASIC15.05■□□□□ 0
CHFRQ96EP1 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.05■□□□□ 0
CHFRQ96EP1 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.05■□□□□ 0
CHFRQ96EP1 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ 0
CHFRQ96EP1 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CHFRQ96EP1 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.05■□□□□ 0
CHFRQ96EP1 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
CHFRQ96EP1 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.05■□□□□ 0
CHFRQ96EP1 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
CHFRQ96EP1 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ -0
CHFRQ96EP1 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC15.05■□□□□ -0
CHFRQ96EP1 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC15.05■□□□□ -0
CHFRQ96EP1 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC15.05■□□□□ -0
CHFRQ96EP1 AC098935.1-201ENST00000446057 611 ntBASIC15.05■□□□□ -0
CHFRQ96EP1 NOC2LP1-201ENST00000450578 752 ntBASIC15.05■□□□□ -0
CHFRQ96EP1 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC15.05■□□□□ -0
CHFRQ96EP1 MBP-227ENST00000526111 581 ntTSL 4 BASIC15.05■□□□□ -0
CHFRQ96EP1 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC15.05■□□□□ -0
CHFRQ96EP1 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC15.05■□□□□ -0
CHFRQ96EP1 AC087045.2-201ENST00000606279 1003 ntBASIC15.05■□□□□ -0
CHFRQ96EP1 AC051619.9-201ENST00000623237 597 ntBASIC15.05■□□□□ -0
CHFRQ96EP1 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC15.05■□□□□ -0
CHFRQ96EP1 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.05■□□□□ -0
CHFRQ96EP1 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CHFRQ96EP1 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
CHFRQ96EP1 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CHFRQ96EP1 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.05■□□□□ -0
CHFRQ96EP1 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CHFRQ96EP1 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
CHFRQ96EP1 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CHFRQ96EP1 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.05■□□□□ -0
CHFRQ96EP1 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
CHFRQ96EP1 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.05■□□□□ -0
CHFRQ96EP1 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.05■□□□□ -0
CHFRQ96EP1 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.05■□□□□ -0
CHFRQ96EP1 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC15.05■□□□□ -0
CHFRQ96EP1 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.05■□□□□ -0
CHFRQ96EP1 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.05■□□□□ -0
CHFRQ96EP1 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CHFRQ96EP1 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
CHFRQ96EP1 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.04■□□□□ -0
CHFRQ96EP1 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CHFRQ96EP1 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.04■□□□□ -0
CHFRQ96EP1 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CHFRQ96EP1 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CHFRQ96EP1 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
CHFRQ96EP1 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.04■□□□□ -0
CHFRQ96EP1 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.04■□□□□ -0
CHFRQ96EP1 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
CHFRQ96EP1 FAS-202ENST00000352159 1722 ntTSL 5 BASIC15.04■□□□□ -0
CHFRQ96EP1 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC15.04■□□□□ -0
CHFRQ96EP1 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
CHFRQ96EP1 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC15.04■□□□□ -0
CHFRQ96EP1 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC15.04■□□□□ -0
CHFRQ96EP1 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
CHFRQ96EP1 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
CHFRQ96EP1 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.04■□□□□ -0
CHFRQ96EP1 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
CHFRQ96EP1 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CHFRQ96EP1 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC15.04■□□□□ -0
CHFRQ96EP1 AL627231.1-201ENST00000394467 1125 ntBASIC15.04■□□□□ -0
CHFRQ96EP1 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC15.04■□□□□ -0
CHFRQ96EP1 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC15.04■□□□□ -0
CHFRQ96EP1 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC15.04■□□□□ -0
CHFRQ96EP1 AL035414.1-201ENST00000451327 857 ntBASIC15.04■□□□□ -0
CHFRQ96EP1 NDUFS6P1-201ENST00000485187 316 ntBASIC15.04■□□□□ -0
CHFRQ96EP1 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC15.04■□□□□ -0
CHFRQ96EP1 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC15.04■□□□□ -0
CHFRQ96EP1 CFL1-206ENST00000527344 962 ntTSL 2 BASIC15.04■□□□□ -0
CHFRQ96EP1 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms