Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 USP20-202ENST00000358355 4371 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 PPP4R3B-206ENST00000616407 4385 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 AC237221.1-202ENST00000563054 2947 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 FAM156B-203ENST00000593751 2942 ntAPPRIS P2 TSL 2 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 FAM156A-201ENST00000596733 2942 ntAPPRIS P2 TSL 2 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 GRM4-204ENST00000535756 6670 ntTSL 5 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 AL359510.2-201ENST00000624958 2249 ntBASIC9.2□□□□□ -0.94
LINC00643Q86TS7 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 KCNMA1-208ENST00000372440 3849 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 KCNMA1-233ENST00000638351 3849 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 CASP8AP2-205ENST00000551025 6151 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 GDPD5-202ENST00000443276 3106 ntTSL 5 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 MAP7D2-202ENST00000379651 3930 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 EPB42-202ENST00000441366 2374 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 NUP58-206ENST00000463407 6360 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 ZNF654-204ENST00000636215 6446 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 HDAC7-202ENST00000354334 4065 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 GLUL-204ENST00000417584 4065 ntAPPRIS P1 TSL 5 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 HDAC7-201ENST00000080059 4095 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 GPR61-204ENST00000527748 4921 ntAPPRIS P1 TSL 2 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 EHD1-213ENST00000621096 3336 ntTSL 5 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 ABCA8-208ENST00000586539 5088 ntAPPRIS P4 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 MARK2P9-201ENST00000430958 1727 ntBASIC9.19□□□□□ -0.94
LINC00643Q86TS7 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 KDM2A-210ENST00000529006 6967 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 WDR92-201ENST00000295121 2626 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 NFASC-202ENST00000360049 10120 ntAPPRIS P3 TSL 5 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 NFASC-225ENST00000539706 10135 ntAPPRIS ALT1 TSL 5 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 CCNA1-201ENST00000255465 1879 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 ARHGEF4-212ENST00000525839 3828 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 MISP-201ENST00000215582 2871 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 CES1-201ENST00000360526 2006 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 AP003969.2-201ENST00000623739 2275 ntBASIC9.19□□□□□ -0.94
LINC00643Q86TS7 NLRP2-202ENST00000339757 3422 ntAPPRIS ALT2 TSL 2 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 ALS2CL-201ENST00000318962 4741 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 AC022364.1-202ENST00000617468 2409 ntBASIC9.19□□□□□ -0.94
LINC00643Q86TS7 ACSF3-201ENST00000317447 3664 ntAPPRIS P1 TSL 2 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 DRD2-208ENST00000542968 2467 ntAPPRIS P2 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 AC243562.2-201ENST00000561247 970 ntBASIC9.19□□□□□ -0.94
LINC00643Q86TS7 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 AC073195.1-201ENST00000607241 877 ntBASIC9.19□□□□□ -0.94
LINC00643Q86TS7 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 REXO1L3P-201ENST00000622202 1288 ntBASIC9.19□□□□□ -0.94
LINC00643Q86TS7 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 KRT18P22-201ENST00000402024 1347 ntBASIC9.19□□□□□ -0.94
LINC00643Q86TS7 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 AL590787.1-201ENST00000568856 1315 ntBASIC9.19□□□□□ -0.94
LINC00643Q86TS7 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 AC018665.1-201ENST00000622927 1362 ntBASIC9.19□□□□□ -0.94
LINC00643Q86TS7 CNTROB-203ENST00000565740 2783 ntAPPRIS ALT2 TSL 5 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 SEZ6-202ENST00000335960 4195 ntAPPRIS ALT2 TSL 5 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 FURIN-201ENST00000268171 4244 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 KCNJ11-201ENST00000339994 2801 ntAPPRIS P1 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 AC011840.2-201ENST00000563063 1520 ntBASIC9.19□□□□□ -0.94
LINC00643Q86TS7 PNPLA7-201ENST00000277531 4581 ntAPPRIS P3 TSL 2 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 NLRP2-214ENST00000543010 3576 ntAPPRIS P3 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 SEC31A-202ENST00000311785 3909 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 SEPT9-207ENST00000449803 3996 ntTSL 2 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 CYP4F12-215ENST00000550308 2044 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 LINC00523-206ENST00000556697 2071 ntTSL 2 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 A1CF-204ENST00000373997 2116 ntAPPRIS ALT1 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 NFATC1-202ENST00000318065 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 GUCY1B3-202ENST00000502959 2255 ntTSL 2 BASIC9.19□□□□□ -0.94
LINC00643Q86TS7 ELMOD3-202ENST00000393852 2332 ntAPPRIS P1 TSL 1 (best) BASIC9.19□□□□□ -0.94
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms