Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 ANKRD19P-201ENST00000338192 862 ntBASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 SPDYE19P-201ENST00000338590 713 ntBASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 MIR663B-201ENST00000408361 115 ntBASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 HIST3H2BA-201ENST00000436555 524 ntBASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 CROCCP4-201ENST00000457096 498 ntBASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC12.48□□□□□ -0.41
PDLIM3Q53GG5 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 CICP14-201ENST00000629111 2732 ntBASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 AC140479.7-201ENST00000636301 2332 ntBASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 AC104457.1-201ENST00000401024 814 ntBASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 FXNP2-201ENST00000411625 547 ntBASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 KRT43P-201ENST00000434019 910 ntBASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 NME4-207ENST00000450036 985 ntTSL 3 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 PFN1P12-201ENST00000455938 534 ntBASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 DOC2GP-202ENST00000514950 1163 ntBASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 TEX28P1-201ENST00000613479 1221 ntBASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 TEX28P2-201ENST00000617764 1221 ntBASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
PDLIM3Q53GG5 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms