Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 AC026748.1-201ENST00000624349 3251 ntBASIC14.37□□□□□ -0.11
COL28A1Q2UY09 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 AL359258.3-201ENST00000622910 2331 ntBASIC14.37□□□□□ -0.11
COL28A1Q2UY09 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 AC127383.1-201ENST00000444697 1800 ntBASIC14.36□□□□□ -0.11
COL28A1Q2UY09 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 AP002414.2-201ENST00000591780 3365 ntBASIC14.36□□□□□ -0.11
COL28A1Q2UY09 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 NSD1-211ENST00000511258 809 ntTSL 3 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 AC103988.2-201ENST00000561804 725 ntBASIC14.36□□□□□ -0.11
COL28A1Q2UY09 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL28A1Q2UY09 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 AC079112.1-201ENST00000454972 939 ntBASIC14.35□□□□□ -0.11
COL28A1Q2UY09 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 BX539320.1-201ENST00000623759 877 ntBASIC14.35□□□□□ -0.11
COL28A1Q2UY09 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 AC005089.1-201ENST00000619486 2241 ntBASIC14.35□□□□□ -0.11
COL28A1Q2UY09 AL157791.1-201ENST00000553667 1699 ntBASIC14.35□□□□□ -0.11
COL28A1Q2UY09 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC14.35□□□□□ -0.11
COL28A1Q2UY09 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms