Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC10.3□□□□□ -0.76
PRKDCP78527 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC10.3□□□□□ -0.76
PRKDCP78527 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC10.3□□□□□ -0.76
PRKDCP78527 GHRL-206ENST00000430179 856 ntAPPRIS ALT1 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 OR52X1P-201ENST00000446117 914 ntBASIC10.3□□□□□ -0.76
PRKDCP78527 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 AC015818.3-201ENST00000583797 589 ntBASIC10.3□□□□□ -0.76
PRKDCP78527 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC10.3□□□□□ -0.76
PRKDCP78527 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC10.3□□□□□ -0.76
PRKDCP78527 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC10.3□□□□□ -0.76
PRKDCP78527 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC10.3□□□□□ -0.76
PRKDCP78527 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC10.3□□□□□ -0.76
PRKDCP78527 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC10.3□□□□□ -0.76
PRKDCP78527 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC10.3□□□□□ -0.76
PRKDCP78527 KRT8P43-201ENST00000406052 1458 ntBASIC10.3□□□□□ -0.76
PRKDCP78527 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC10.3□□□□□ -0.76
PRKDCP78527 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 POP5-201ENST00000341039 913 ntTSL 2 BASIC10.3□□□□□ -0.76
PRKDCP78527 PHBP10-201ENST00000416467 784 ntBASIC10.3□□□□□ -0.76
PRKDCP78527 AL512328.1-203ENST00000428480 673 ntTSL 5 BASIC10.3□□□□□ -0.76
PRKDCP78527 AC009517.1-201ENST00000454750 570 ntBASIC10.3□□□□□ -0.76
PRKDCP78527 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC10.3□□□□□ -0.76
PRKDCP78527 IQSEC2-205ENST00000498281 673 ntTSL 3 BASIC10.3□□□□□ -0.76
PRKDCP78527 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC10.3□□□□□ -0.76
PRKDCP78527 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 DDIAS-204ENST00000525388 961 ntAPPRIS ALT2 TSL 2 BASIC10.3□□□□□ -0.76
PRKDCP78527 GRAPL-204ENST00000577213 866 ntAPPRIS ALT2 TSL 2 BASIC10.3□□□□□ -0.76
PRKDCP78527 AC138150.1-201ENST00000589950 570 ntTSL 4 BASIC10.3□□□□□ -0.76
PRKDCP78527 KF455155.1-201ENST00000604493 303 ntBASIC10.3□□□□□ -0.76
PRKDCP78527 MIR6819-201ENST00000622122 61 ntBASIC10.3□□□□□ -0.76
PRKDCP78527 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC10.3□□□□□ -0.76
PRKDCP78527 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC10.3□□□□□ -0.76
PRKDCP78527 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC10.3□□□□□ -0.76
PRKDCP78527 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC10.3□□□□□ -0.76
PRKDCP78527 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.76
PRKDCP78527 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC10.3□□□□□ -0.76
PRKDCP78527 MIR339-201ENST00000362153 94 ntBASIC10.3□□□□□ -0.76
PRKDCP78527 RN7SL76P-201ENST00000482435 289 ntBASIC10.3□□□□□ -0.76
PRKDCP78527 AL139317.2-201ENST00000556998 158 ntBASIC10.3□□□□□ -0.76
PRKDCP78527 CLDN6-203ENST00000572154 461 ntTSL 3 BASIC10.3□□□□□ -0.76
PRKDCP78527 MIR4265-201ENST00000582152 99 ntBASIC10.3□□□□□ -0.76
PRKDCP78527 AL133467.4-201ENST00000602953 725 ntBASIC10.3□□□□□ -0.76
PRKDCP78527 BX322562.1-201ENST00000617004 561 ntBASIC10.3□□□□□ -0.76
PRKDCP78527 AC090386.2-201ENST00000623010 1039 ntBASIC10.3□□□□□ -0.76
PRKDCP78527 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC10.3□□□□□ -0.76
PRKDCP78527 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC10.29□□□□□ -0.76
PRKDCP78527 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC10.29□□□□□ -0.76
PRKDCP78527 OAZ3-201ENST00000321531 851 ntTSL 5 BASIC10.29□□□□□ -0.76
PRKDCP78527 EIF2B5-202ENST00000432569 984 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC10.29□□□□□ -0.76
PRKDCP78527 DUX4L31-201ENST00000446466 1136 ntBASIC10.29□□□□□ -0.76
PRKDCP78527 CFL1P1-204ENST00000456375 424 ntTSL 3 BASIC10.29□□□□□ -0.76
PRKDCP78527 IMMP1L-215ENST00000534812 612 ntTSL 2 BASIC10.29□□□□□ -0.76
PRKDCP78527 METTL7AP1-201ENST00000547343 496 ntBASIC10.29□□□□□ -0.76
PRKDCP78527 CICP23-201ENST00000605013 2741 ntBASIC10.29□□□□□ -0.76
PRKDCP78527 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC10.29□□□□□ -0.76
PRKDCP78527 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC10.29□□□□□ -0.76
PRKDCP78527 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC10.29□□□□□ -0.76
PRKDCP78527 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC10.29□□□□□ -0.76
PRKDCP78527 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC10.29□□□□□ -0.76
PRKDCP78527 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC10.29□□□□□ -0.76
PRKDCP78527 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC10.29□□□□□ -0.76
PRKDCP78527 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 RN7SKP212-201ENST00000410851 328 ntBASIC10.29□□□□□ -0.76
PRKDCP78527 RPL3P2-204ENST00000413027 1203 ntBASIC10.29□□□□□ -0.76
PRKDCP78527 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC10.29□□□□□ -0.76
PRKDCP78527 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC10.29□□□□□ -0.76
PRKDCP78527 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC10.29□□□□□ -0.76
PRKDCP78527 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC10.29□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms