Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 RPS15-208ENST00000591804 711 ntTSL 5 BASIC12.07□□□□□ -0.48
CX3CL1P78423 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CX3CL1P78423 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC12.07□□□□□ -0.48
CX3CL1P78423 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC12.07□□□□□ -0.48
CX3CL1P78423 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CX3CL1P78423 AL137783.1-201ENST00000623494 1896 ntBASIC12.07□□□□□ -0.48
CX3CL1P78423 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
CX3CL1P78423 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CX3CL1P78423 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
CX3CL1P78423 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC12.07□□□□□ -0.48
CX3CL1P78423 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CX3CL1P78423 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
CX3CL1P78423 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CX3CL1P78423 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC12.07□□□□□ -0.48
CX3CL1P78423 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC12.07□□□□□ -0.48
CX3CL1P78423 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC12.06□□□□□ -0.48
CX3CL1P78423 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC12.06□□□□□ -0.48
CX3CL1P78423 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 KRT8P14-201ENST00000414254 1442 ntBASIC12.06□□□□□ -0.48
CX3CL1P78423 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC12.06□□□□□ -0.48
CX3CL1P78423 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 RNU1-114P-201ENST00000365297 166 ntBASIC12.06□□□□□ -0.48
CX3CL1P78423 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
CX3CL1P78423 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
CX3CL1P78423 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC12.06□□□□□ -0.48
CX3CL1P78423 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 KLF2P2-201ENST00000416807 1039 ntBASIC12.06□□□□□ -0.48
CX3CL1P78423 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC12.06□□□□□ -0.48
CX3CL1P78423 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 AC093433.1-201ENST00000458048 571 ntBASIC12.06□□□□□ -0.48
CX3CL1P78423 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC12.06□□□□□ -0.48
CX3CL1P78423 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC12.06□□□□□ -0.48
CX3CL1P78423 KRT18P25-201ENST00000508931 1278 ntBASIC12.06□□□□□ -0.48
CX3CL1P78423 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC12.06□□□□□ -0.48
CX3CL1P78423 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC12.06□□□□□ -0.48
CX3CL1P78423 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
CX3CL1P78423 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC12.06□□□□□ -0.48
CX3CL1P78423 KSR1-207ENST00000578981 748 ntTSL 4 BASIC12.06□□□□□ -0.48
CX3CL1P78423 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC12.06□□□□□ -0.48
CX3CL1P78423 ATF5-205ENST00000600336 682 ntTSL 2 BASIC12.06□□□□□ -0.48
CX3CL1P78423 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
CX3CL1P78423 AL358472.5-202ENST00000641448 1267 ntBASIC12.06□□□□□ -0.48
CX3CL1P78423 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
CX3CL1P78423 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
CX3CL1P78423 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC12.06□□□□□ -0.48
CX3CL1P78423 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC12.06□□□□□ -0.48
CX3CL1P78423 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
CX3CL1P78423 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC12.06□□□□□ -0.48
CX3CL1P78423 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC12.06□□□□□ -0.48
CX3CL1P78423 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC12.06□□□□□ -0.48
CX3CL1P78423 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC12.06□□□□□ -0.48
CX3CL1P78423 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC12.06□□□□□ -0.48
CX3CL1P78423 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC12.06□□□□□ -0.48
CX3CL1P78423 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC12.06□□□□□ -0.48
CX3CL1P78423 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
CX3CL1P78423 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC12.06□□□□□ -0.48
CX3CL1P78423 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC12.06□□□□□ -0.48
CX3CL1P78423 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CX3CL1P78423 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
CX3CL1P78423 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CX3CL1P78423 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
CX3CL1P78423 SRC-202ENST00000373558 4304 ntTSL 5 BASIC12.05□□□□□ -0.48
CX3CL1P78423 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CX3CL1P78423 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CX3CL1P78423 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC12.05□□□□□ -0.48
CX3CL1P78423 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC12.05□□□□□ -0.48
CX3CL1P78423 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CX3CL1P78423 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CX3CL1P78423 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CX3CL1P78423 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
CX3CL1P78423 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC12.05□□□□□ -0.48
CX3CL1P78423 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms