Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC16■□□□□ 0.15
VCPP55072 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
VCPP55072 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.99■□□□□ 0.15
VCPP55072 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.99■□□□□ 0.15
VCPP55072 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
VCPP55072 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC15.99■□□□□ 0.15
VCPP55072 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.99■□□□□ 0.15
VCPP55072 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 MIR769-201ENST00000390225 118 ntBASIC15.99■□□□□ 0.15
VCPP55072 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC15.99■□□□□ 0.15
VCPP55072 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC15.99■□□□□ 0.15
VCPP55072 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
VCPP55072 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC15.99■□□□□ 0.15
VCPP55072 PRKXP1-201ENST00000561423 1122 ntBASIC15.99■□□□□ 0.15
VCPP55072 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC15.99■□□□□ 0.15
VCPP55072 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.99■□□□□ 0.15
VCPP55072 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.99■□□□□ 0.15
VCPP55072 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.99■□□□□ 0.15
VCPP55072 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.99■□□□□ 0.15
VCPP55072 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC15.99■□□□□ 0.15
VCPP55072 AL353726.2-201ENST00000623259 884 ntBASIC15.99■□□□□ 0.15
VCPP55072 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
VCPP55072 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.99■□□□□ 0.15
VCPP55072 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
VCPP55072 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
VCPP55072 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.99■□□□□ 0.15
VCPP55072 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.99■□□□□ 0.15
VCPP55072 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VCPP55072 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VCPP55072 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.98■□□□□ 0.15
VCPP55072 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.98■□□□□ 0.15
VCPP55072 CICP14-201ENST00000629111 2732 ntBASIC15.98■□□□□ 0.15
VCPP55072 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC15.98■□□□□ 0.15
VCPP55072 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.98■□□□□ 0.15
VCPP55072 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCPP55072 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VCPP55072 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VCPP55072 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
VCPP55072 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC15.98■□□□□ 0.15
VCPP55072 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
VCPP55072 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCPP55072 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCPP55072 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VCPP55072 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VCPP55072 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC15.98■□□□□ 0.15
VCPP55072 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VCPP55072 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VCPP55072 AC016700.1-201ENST00000429424 312 ntBASIC15.98■□□□□ 0.15
VCPP55072 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC15.98■□□□□ 0.15
VCPP55072 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.98■□□□□ 0.15
VCPP55072 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCPP55072 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
VCPP55072 IQSEC3P1-201ENST00000538799 536 ntBASIC15.98■□□□□ 0.15
VCPP55072 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCPP55072 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC15.98■□□□□ 0.15
VCPP55072 RN7SL555P-201ENST00000584742 339 ntBASIC15.98■□□□□ 0.15
VCPP55072 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.98■□□□□ 0.15
VCPP55072 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.98■□□□□ 0.15
VCPP55072 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.98■□□□□ 0.15
VCPP55072 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCPP55072 AC007686.3-201ENST00000619017 3487 ntBASIC15.98■□□□□ 0.15
VCPP55072 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCPP55072 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCPP55072 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCPP55072 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VCPP55072 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VCPP55072 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
VCPP55072 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.97■□□□□ 0.15
VCPP55072 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.97■□□□□ 0.15
VCPP55072 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC15.97■□□□□ 0.15
VCPP55072 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VCPP55072 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms