Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
NEK3P51956 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.4■□□□□ 0.06
NEK3P51956 MFF-223ENST00000524634 647 ntTSL 2 BASIC15.4■□□□□ 0.06
NEK3P51956 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC15.4■□□□□ 0.06
NEK3P51956 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.4■□□□□ 0.06
NEK3P51956 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.4■□□□□ 0.06
NEK3P51956 AC079316.1-201ENST00000548397 411 ntBASIC15.4■□□□□ 0.06
NEK3P51956 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC15.4■□□□□ 0.06
NEK3P51956 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.4■□□□□ 0.06
NEK3P51956 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.4■□□□□ 0.06
NEK3P51956 RHOXF1P1-202ENST00000635473 501 ntBASIC15.4■□□□□ 0.06
NEK3P51956 PRSS30P-206ENST00000641773 873 ntBASIC15.4■□□□□ 0.06
NEK3P51956 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
NEK3P51956 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
NEK3P51956 REXO1L4P-201ENST00000605109 1937 ntBASIC15.4■□□□□ 0.06
NEK3P51956 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
NEK3P51956 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
NEK3P51956 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
NEK3P51956 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
NEK3P51956 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
NEK3P51956 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
NEK3P51956 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.4■□□□□ 0.06
NEK3P51956 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC15.39■□□□□ 0.06
NEK3P51956 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 AL158070.2-201ENST00000623713 1621 ntBASIC15.39■□□□□ 0.05
NEK3P51956 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
NEK3P51956 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
NEK3P51956 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.39■□□□□ 0.05
NEK3P51956 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
NEK3P51956 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.39■□□□□ 0.05
NEK3P51956 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.39■□□□□ 0.05
NEK3P51956 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.39■□□□□ 0.05
NEK3P51956 BNIP3P42-201ENST00000454982 569 ntBASIC15.39■□□□□ 0.05
NEK3P51956 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.39■□□□□ 0.05
NEK3P51956 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.39■□□□□ 0.05
NEK3P51956 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC15.39■□□□□ 0.05
NEK3P51956 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC15.39■□□□□ 0.05
NEK3P51956 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC15.39■□□□□ 0.05
NEK3P51956 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.39■□□□□ 0.05
NEK3P51956 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.39■□□□□ 0.05
NEK3P51956 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 BNIP3P29-201ENST00000598302 571 ntBASIC15.39■□□□□ 0.05
NEK3P51956 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.39■□□□□ 0.05
NEK3P51956 AC011447.5-201ENST00000616168 564 ntBASIC15.39■□□□□ 0.05
NEK3P51956 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.39■□□□□ 0.05
NEK3P51956 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC15.39■□□□□ 0.05
NEK3P51956 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.39■□□□□ 0.05
NEK3P51956 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.39■□□□□ 0.05
NEK3P51956 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
NEK3P51956 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.39■□□□□ 0.05
NEK3P51956 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
NEK3P51956 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.39■□□□□ 0.05
NEK3P51956 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
NEK3P51956 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.39■□□□□ 0.05
NEK3P51956 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
NEK3P51956 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
NEK3P51956 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
NEK3P51956 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
NEK3P51956 LRRC59-203ENST00000576448 1531 ntBASIC15.38■□□□□ 0.05
NEK3P51956 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
NEK3P51956 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
NEK3P51956 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
NEK3P51956 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.38■□□□□ 0.05
NEK3P51956 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
NEK3P51956 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.38■□□□□ 0.05
NEK3P51956 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC15.38■□□□□ 0.05
NEK3P51956 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC15.38■□□□□ 0.05
NEK3P51956 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.38■□□□□ 0.05
NEK3P51956 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
NEK3P51956 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
NEK3P51956 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
NEK3P51956 AC104457.1-201ENST00000401024 814 ntBASIC15.38■□□□□ 0.05
NEK3P51956 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.38■□□□□ 0.05
NEK3P51956 AL139094.1-201ENST00000405549 1188 ntBASIC15.38■□□□□ 0.05
NEK3P51956 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.38■□□□□ 0.05
NEK3P51956 AC099336.1-201ENST00000417053 1171 ntBASIC15.38■□□□□ 0.05
NEK3P51956 HLA-V-201ENST00000429037 534 ntBASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms