Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC13.18□□□□□ -0.3
SOX2P48431 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC13.18□□□□□ -0.3
SOX2P48431 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.18□□□□□ -0.3
SOX2P48431 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.18□□□□□ -0.3
SOX2P48431 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 AGGF1P1-201ENST00000509500 2073 ntBASIC13.18□□□□□ -0.3
SOX2P48431 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 HNRNPFP1-201ENST00000391730 1133 ntBASIC13.18□□□□□ -0.3
SOX2P48431 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC13.18□□□□□ -0.3
SOX2P48431 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC13.18□□□□□ -0.3
SOX2P48431 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
SOX2P48431 TIMM17BP1-201ENST00000545713 516 ntBASIC13.18□□□□□ -0.3
SOX2P48431 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC13.18□□□□□ -0.3
SOX2P48431 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC13.18□□□□□ -0.3
SOX2P48431 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC13.18□□□□□ -0.3
SOX2P48431 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC13.18□□□□□ -0.3
SOX2P48431 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC13.18□□□□□ -0.3
SOX2P48431 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
SOX2P48431 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC13.18□□□□□ -0.3
SOX2P48431 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.18□□□□□ -0.3
SOX2P48431 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
SOX2P48431 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
SOX2P48431 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.18□□□□□ -0.3
SOX2P48431 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
SOX2P48431 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX2P48431 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
SOX2P48431 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
SOX2P48431 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 AC012617.1-204ENST00000586340 2305 ntBASIC13.17□□□□□ -0.3
SOX2P48431 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
SOX2P48431 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.17□□□□□ -0.3
SOX2P48431 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC13.17□□□□□ -0.3
SOX2P48431 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 MVK-214ENST00000629016 1591 ntTSL 5 BASIC13.17□□□□□ -0.3
SOX2P48431 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
SOX2P48431 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
SOX2P48431 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC13.17□□□□□ -0.3
SOX2P48431 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
SOX2P48431 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 AC211486.1-202ENST00000416371 468 ntBASIC13.17□□□□□ -0.3
SOX2P48431 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC13.17□□□□□ -0.3
SOX2P48431 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC13.17□□□□□ -0.3
SOX2P48431 AC211476.1-201ENST00000503899 468 ntBASIC13.17□□□□□ -0.3
SOX2P48431 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC13.17□□□□□ -0.3
SOX2P48431 DAD1-205ENST00000543337 501 ntTSL 3 BASIC13.17□□□□□ -0.3
SOX2P48431 AL512356.2-201ENST00000546955 174 ntBASIC13.17□□□□□ -0.3
SOX2P48431 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC13.17□□□□□ -0.3
SOX2P48431 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC13.17□□□□□ -0.3
SOX2P48431 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC13.17□□□□□ -0.3
SOX2P48431 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC13.17□□□□□ -0.3
SOX2P48431 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
SOX2P48431 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
SOX2P48431 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC13.17□□□□□ -0.3
SOX2P48431 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.17□□□□□ -0.3
SOX2P48431 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX2P48431 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
SOX2P48431 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
SOX2P48431 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
SOX2P48431 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms