Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
PTPN4P29074 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.05■□□□□ -0
PTPN4P29074 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTPN4P29074 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTPN4P29074 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC15.05■□□□□ -0
PTPN4P29074 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
PTPN4P29074 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC15.05■□□□□ -0
PTPN4P29074 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
PTPN4P29074 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC15.05■□□□□ -0
PTPN4P29074 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
PTPN4P29074 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC15.05■□□□□ -0
PTPN4P29074 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
PTPN4P29074 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC15.04■□□□□ -0
PTPN4P29074 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
PTPN4P29074 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC15.04■□□□□ -0
PTPN4P29074 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC15.04■□□□□ -0
PTPN4P29074 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
PTPN4P29074 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
PTPN4P29074 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC15.04■□□□□ -0
PTPN4P29074 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 SLC6A6P1-201ENST00000413933 1850 ntBASIC15.04■□□□□ -0
PTPN4P29074 AC084364.1-201ENST00000551967 1556 ntBASIC15.04■□□□□ -0
PTPN4P29074 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
PTPN4P29074 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC15.04■□□□□ -0
PTPN4P29074 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
PTPN4P29074 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
PTPN4P29074 GHSR-202ENST00000427970 912 ntBASIC15.04■□□□□ -0
PTPN4P29074 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.04■□□□□ -0
PTPN4P29074 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC15.04■□□□□ -0
PTPN4P29074 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
PTPN4P29074 PHKG1P2-201ENST00000457537 863 ntBASIC15.04■□□□□ -0
PTPN4P29074 ELK1P1-201ENST00000485699 580 ntBASIC15.04■□□□□ -0
PTPN4P29074 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 FADS2-205ENST00000517839 469 ntTSL 3 BASIC15.04■□□□□ -0
PTPN4P29074 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.04■□□□□ -0
PTPN4P29074 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.04■□□□□ -0
PTPN4P29074 HILS1-202ENST00000545329 423 ntBASIC15.04■□□□□ -0
PTPN4P29074 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.04■□□□□ -0
PTPN4P29074 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC15.04■□□□□ -0
PTPN4P29074 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.04■□□□□ -0
PTPN4P29074 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC15.04■□□□□ -0
PTPN4P29074 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.04■□□□□ -0
PTPN4P29074 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC15.04■□□□□ -0
PTPN4P29074 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC15.04■□□□□ -0
PTPN4P29074 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.04■□□□□ -0
PTPN4P29074 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
PTPN4P29074 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC15.04■□□□□ -0
PTPN4P29074 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.04■□□□□ -0
PTPN4P29074 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN4P29074 AC055811.4-201ENST00000624039 1754 ntBASIC15.03■□□□□ -0
PTPN4P29074 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN4P29074 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
PTPN4P29074 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN4P29074 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN4P29074 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.03■□□□□ -0
PTPN4P29074 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
PTPN4P29074 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.03■□□□□ -0
PTPN4P29074 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
PTPN4P29074 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN4P29074 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
PTPN4P29074 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
PTPN4P29074 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC15.03■□□□□ -0
PTPN4P29074 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN4P29074 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
PTPN4P29074 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC15.03■□□□□ -0
PTPN4P29074 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN4P29074 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.03■□□□□ -0
PTPN4P29074 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
PTPN4P29074 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
PTPN4P29074 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.03■□□□□ -0
PTPN4P29074 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC15.03■□□□□ -0
PTPN4P29074 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.03■□□□□ -0
PTPN4P29074 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
PTPN4P29074 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC15.03■□□□□ -0
PTPN4P29074 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.03■□□□□ -0
PTPN4P29074 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC15.03■□□□□ -0
PTPN4P29074 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.03■□□□□ -0
PTPN4P29074 CTBP2P3-201ENST00000585629 1255 ntBASIC15.03■□□□□ -0
PTPN4P29074 IFT20-216ENST00000588477 774 ntTSL 5 BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms