Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL8A1P27658 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC13□□□□□ -0.33
COL8A1P27658 AL357373.1-201ENST00000394974 322 ntBASIC13□□□□□ -0.33
COL8A1P27658 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL8A1P27658 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC13□□□□□ -0.33
COL8A1P27658 PSMD4P1-201ENST00000433951 1109 ntBASIC13□□□□□ -0.33
COL8A1P27658 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC13□□□□□ -0.33
COL8A1P27658 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC13□□□□□ -0.33
COL8A1P27658 CHCHD2P9-201ENST00000461726 456 ntBASIC13□□□□□ -0.33
COL8A1P27658 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC13□□□□□ -0.33
COL8A1P27658 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC13□□□□□ -0.33
COL8A1P27658 CR383656.3-201ENST00000551315 183 ntBASIC13□□□□□ -0.33
COL8A1P27658 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
COL8A1P27658 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC13□□□□□ -0.33
COL8A1P27658 RPS15-202ENST00000585665 467 ntTSL 3 BASIC13□□□□□ -0.33
COL8A1P27658 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
COL8A1P27658 LINC01783-202ENST00000614408 828 ntBASIC13□□□□□ -0.33
COL8A1P27658 BX284668.2-205ENST00000619677 828 ntBASIC13□□□□□ -0.33
COL8A1P27658 AC073592.2-201ENST00000623062 780 ntBASIC13□□□□□ -0.33
COL8A1P27658 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC13□□□□□ -0.33
COL8A1P27658 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
COL8A1P27658 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL8A1P27658 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC13□□□□□ -0.33
COL8A1P27658 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
COL8A1P27658 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
COL8A1P27658 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
COL8A1P27658 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
COL8A1P27658 FLII-221ENST00000578558 2377 ntTSL 5 BASIC13□□□□□ -0.33
COL8A1P27658 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL8A1P27658 MST1L-201ENST00000442552 2185 ntBASIC13□□□□□ -0.33
COL8A1P27658 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC13□□□□□ -0.33
COL8A1P27658 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL8A1P27658 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
COL8A1P27658 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
COL8A1P27658 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC12.99□□□□□ -0.33
COL8A1P27658 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC12.99□□□□□ -0.33
COL8A1P27658 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC12.99□□□□□ -0.33
COL8A1P27658 AP003680.1-201ENST00000598970 3660 ntBASIC12.99□□□□□ -0.33
COL8A1P27658 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 AP000593.2-201ENST00000542775 1433 ntBASIC12.99□□□□□ -0.33
COL8A1P27658 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC12.99□□□□□ -0.33
COL8A1P27658 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
COL8A1P27658 AL357563.1-201ENST00000404728 395 ntBASIC12.99□□□□□ -0.33
COL8A1P27658 RN7SKP175-201ENST00000408472 289 ntBASIC12.99□□□□□ -0.33
COL8A1P27658 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 LINC00634-202ENST00000505157 222 ntBASIC12.99□□□□□ -0.33
COL8A1P27658 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
COL8A1P27658 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC12.99□□□□□ -0.33
COL8A1P27658 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC12.99□□□□□ -0.33
COL8A1P27658 SIGLEC18P-201ENST00000602271 909 ntBASIC12.99□□□□□ -0.33
COL8A1P27658 AC084781.1-201ENST00000613737 656 ntBASIC12.99□□□□□ -0.33
COL8A1P27658 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
COL8A1P27658 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
COL8A1P27658 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
COL8A1P27658 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC12.99□□□□□ -0.33
COL8A1P27658 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
COL8A1P27658 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 AC020910.5-201ENST00000623668 1865 ntBASIC12.99□□□□□ -0.33
COL8A1P27658 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC12.99□□□□□ -0.33
COL8A1P27658 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC12.99□□□□□ -0.33
COL8A1P27658 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
COL8A1P27658 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL8A1P27658 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC12.98□□□□□ -0.33
COL8A1P27658 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC12.98□□□□□ -0.33
COL8A1P27658 REXO1L5P-201ENST00000622260 2098 ntBASIC12.98□□□□□ -0.33
COL8A1P27658 SBF1P1-201ENST00000444527 5631 ntBASIC12.98□□□□□ -0.33
COL8A1P27658 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC12.98□□□□□ -0.33
COL8A1P27658 AC103702.1-201ENST00000548801 2630 ntBASIC12.98□□□□□ -0.33
COL8A1P27658 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC12.98□□□□□ -0.33
COL8A1P27658 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC12.98□□□□□ -0.33
COL8A1P27658 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 STK26-204ENST00000481105 1835 ntTSL 2 BASIC12.98□□□□□ -0.33
COL8A1P27658 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC12.98□□□□□ -0.33
COL8A1P27658 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL8A1P27658 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC12.98□□□□□ -0.33
COL8A1P27658 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms