Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC11.59□□□□□ -0.55
CXCL1P09341 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 DLX4-206ENST00000611342 1662 ntBASIC11.59□□□□□ -0.55
CXCL1P09341 CMIP-208ENST00000566462 3512 ntTSL 4 BASIC11.59□□□□□ -0.55
CXCL1P09341 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC11.59□□□□□ -0.55
CXCL1P09341 PCDHB17P-202ENST00000623466 3066 ntBASIC11.58□□□□□ -0.55
CXCL1P09341 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC11.58□□□□□ -0.55
CXCL1P09341 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC11.58□□□□□ -0.55
CXCL1P09341 PAM-203ENST00000346918 3302 ntTSL 5 BASIC11.58□□□□□ -0.55
CXCL1P09341 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
CXCL1P09341 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.55
CXCL1P09341 LINC02015-202ENST00000436078 2957 ntTSL 2 BASIC11.58□□□□□ -0.55
CXCL1P09341 AC022400.8-201ENST00000623453 3599 ntBASIC11.58□□□□□ -0.56
CXCL1P09341 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC11.58□□□□□ -0.56
CXCL1P09341 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 DTX1-201ENST00000257600 3455 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 KCNIP3-202ENST00000360990 2798 ntTSL 5 BASIC11.58□□□□□ -0.56
CXCL1P09341 PRPF4-201ENST00000374198 2787 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 MAN2C1-242ENST00000569482 3177 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 DPP8-204ENST00000358939 2822 ntTSL 2 BASIC11.58□□□□□ -0.56
CXCL1P09341 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC11.58□□□□□ -0.56
CXCL1P09341 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC11.58□□□□□ -0.56
CXCL1P09341 INPP5J-201ENST00000331075 3347 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.56
CXCL1P09341 CYTH1-203ENST00000585509 3315 ntTSL 5 BASIC11.58□□□□□ -0.56
CXCL1P09341 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 ENOX1-201ENST00000261488 2982 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC11.58□□□□□ -0.56
CXCL1P09341 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC11.58□□□□□ -0.56
CXCL1P09341 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC11.58□□□□□ -0.56
CXCL1P09341 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC11.58□□□□□ -0.56
CXCL1P09341 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC11.58□□□□□ -0.56
CXCL1P09341 SDHD-206ENST00000528182 754 ntTSL 3 BASIC11.58□□□□□ -0.56
CXCL1P09341 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
CXCL1P09341 AL121912.1-201ENST00000603683 238 ntBASIC11.58□□□□□ -0.56
CXCL1P09341 LPO-204ENST00000543544 2350 ntTSL 2 BASIC11.58□□□□□ -0.56
CXCL1P09341 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC11.58□□□□□ -0.56
CXCL1P09341 MEP1A-201ENST00000230588 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
CXCL1P09341 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC11.58□□□□□ -0.56
CXCL1P09341 PRR3-202ENST00000376560 2254 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 GNAL-203ENST00000423027 2255 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 ZNF689-201ENST00000287461 3547 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 NARF-206ENST00000457415 1668 ntTSL 5 BASIC11.58□□□□□ -0.56
CXCL1P09341 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC11.58□□□□□ -0.56
CXCL1P09341 JADE1-209ENST00000511647 3560 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 GUCY1B3-204ENST00000505154 2316 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC11.58□□□□□ -0.56
CXCL1P09341 ARAF-203ENST00000377045 2458 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.56
CXCL1P09341 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.56
CXCL1P09341 GLP1R-201ENST00000373256 3105 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CXCL1P09341 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
CXCL1P09341 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC11.57□□□□□ -0.56
CXCL1P09341 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
CXCL1P09341 TRIM3-203ENST00000525074 3044 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
CXCL1P09341 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC11.57□□□□□ -0.56
CXCL1P09341 TAX1BP1-207ENST00000433216 3174 ntTSL 2 BASIC11.57□□□□□ -0.56
CXCL1P09341 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC11.57□□□□□ -0.56
CXCL1P09341 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CXCL1P09341 HARS-207ENST00000504156 3334 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CXCL1P09341 ZFYVE27-205ENST00000370613 2669 ntTSL 2 BASIC11.57□□□□□ -0.56
CXCL1P09341 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC11.57□□□□□ -0.56
CXCL1P09341 AC011498.7-201ENST00000624986 2027 ntBASIC11.57□□□□□ -0.56
CXCL1P09341 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC11.57□□□□□ -0.56
CXCL1P09341 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
CXCL1P09341 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CXCL1P09341 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CXCL1P09341 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CXCL1P09341 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CXCL1P09341 PER1-202ENST00000354903 3115 ntTSL 2 BASIC11.57□□□□□ -0.56
CXCL1P09341 TNK1-201ENST00000570896 3122 ntAPPRIS P3 TSL 5 BASIC11.57□□□□□ -0.56
CXCL1P09341 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CXCL1P09341 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CXCL1P09341 ZBED8-201ENST00000408953 2851 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
CXCL1P09341 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CXCL1P09341 HPX-201ENST00000265983 1652 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CXCL1P09341 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CXCL1P09341 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
CXCL1P09341 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CXCL1P09341 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CXCL1P09341 FAM220BP-201ENST00000377689 816 ntBASIC11.57□□□□□ -0.56
CXCL1P09341 AC002056.1-201ENST00000395613 760 ntBASIC11.57□□□□□ -0.56
CXCL1P09341 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC11.57□□□□□ -0.56
CXCL1P09341 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
CXCL1P09341 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC11.57□□□□□ -0.56
CXCL1P09341 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms