Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LDB3O75112 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
LDB3O75112 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
LDB3O75112 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LDB3O75112 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LDB3O75112 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.02□□□□□ -0.16
LDB3O75112 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
LDB3O75112 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
LDB3O75112 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LDB3O75112 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LDB3O75112 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LDB3O75112 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.02□□□□□ -0.16
LDB3O75112 AC140479.7-201ENST00000636301 2332 ntBASIC14.02□□□□□ -0.16
LDB3O75112 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.02□□□□□ -0.16
LDB3O75112 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LDB3O75112 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
LDB3O75112 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.02□□□□□ -0.16
LDB3O75112 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
LDB3O75112 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
LDB3O75112 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
LDB3O75112 AP000593.2-201ENST00000542775 1433 ntBASIC14.02□□□□□ -0.16
LDB3O75112 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
LDB3O75112 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.02□□□□□ -0.17
LDB3O75112 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
LDB3O75112 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
LDB3O75112 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
LDB3O75112 RN7SKP175-201ENST00000408472 289 ntBASIC14.02□□□□□ -0.17
LDB3O75112 AC099336.1-201ENST00000417053 1171 ntBASIC14.02□□□□□ -0.17
LDB3O75112 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
LDB3O75112 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
LDB3O75112 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC14.02□□□□□ -0.17
LDB3O75112 PFN2-215ENST00000497148 743 ntTSL 4 BASIC14.02□□□□□ -0.17
LDB3O75112 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.02□□□□□ -0.17
LDB3O75112 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC14.02□□□□□ -0.17
LDB3O75112 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC14.02□□□□□ -0.17
LDB3O75112 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC14.02□□□□□ -0.17
LDB3O75112 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.02□□□□□ -0.17
LDB3O75112 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC14.02□□□□□ -0.17
LDB3O75112 PUDP-206ENST00000540122 825 ntTSL 2 BASIC14.02□□□□□ -0.17
LDB3O75112 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
LDB3O75112 NOP2-220ENST00000545915 630 ntTSL 2 BASIC14.02□□□□□ -0.17
LDB3O75112 AC079316.1-201ENST00000548397 411 ntBASIC14.02□□□□□ -0.17
LDB3O75112 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC14.02□□□□□ -0.17
LDB3O75112 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
LDB3O75112 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC14.02□□□□□ -0.17
LDB3O75112 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC14.02□□□□□ -0.17
LDB3O75112 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC14.02□□□□□ -0.17
LDB3O75112 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC14.02□□□□□ -0.17
LDB3O75112 AC073413.1-201ENST00000603927 732 ntBASIC14.02□□□□□ -0.17
LDB3O75112 COX11-210ENST00000639671 696 ntBASIC14.02□□□□□ -0.17
LDB3O75112 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LDB3O75112 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
LDB3O75112 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
LDB3O75112 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.02□□□□□ -0.17
LDB3O75112 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LDB3O75112 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LDB3O75112 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
LDB3O75112 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
LDB3O75112 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.02□□□□□ -0.17
LDB3O75112 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
LDB3O75112 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
LDB3O75112 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 AC007292.2-201ENST00000593524 1812 ntBASIC14.01□□□□□ -0.17
LDB3O75112 AC007326.2-201ENST00000624224 7579 ntBASIC14.01□□□□□ -0.17
LDB3O75112 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.01□□□□□ -0.17
LDB3O75112 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 KRT8P4-201ENST00000509735 1454 ntBASIC14.01□□□□□ -0.17
LDB3O75112 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.01□□□□□ -0.17
LDB3O75112 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC14.01□□□□□ -0.17
LDB3O75112 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.01□□□□□ -0.17
LDB3O75112 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.01□□□□□ -0.17
LDB3O75112 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
LDB3O75112 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.01□□□□□ -0.17
LDB3O75112 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.01□□□□□ -0.17
LDB3O75112 STX1A-203ENST00000395155 783 ntTSL 2 BASIC14.01□□□□□ -0.17
LDB3O75112 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
LDB3O75112 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
LDB3O75112 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC14.01□□□□□ -0.17
LDB3O75112 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC14.01□□□□□ -0.17
LDB3O75112 CSF2RBP1-201ENST00000447905 391 ntBASIC14.01□□□□□ -0.17
LDB3O75112 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LDB3O75112 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms