Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 S100A2-202ENST00000368708 998 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 RN7SL69P-201ENST00000468423 272 ntBASIC11.25□□□□□ -0.61
COL6A5A8TX70 DPY19L2P4-201ENST00000479881 442 ntBASIC11.25□□□□□ -0.61
COL6A5A8TX70 RN7SL363P-201ENST00000482412 273 ntBASIC11.25□□□□□ -0.61
COL6A5A8TX70 TMEM154-202ENST00000504064 878 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 AL359091.4-201ENST00000610052 409 ntBASIC11.25□□□□□ -0.61
COL6A5A8TX70 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 RPL13AP3-202ENST00000494676 1473 ntBASIC11.25□□□□□ -0.61
COL6A5A8TX70 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC11.25□□□□□ -0.61
COL6A5A8TX70 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
COL6A5A8TX70 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 AC000077.1-201ENST00000420012 953 ntBASIC11.24□□□□□ -0.61
COL6A5A8TX70 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC11.24□□□□□ -0.61
COL6A5A8TX70 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 RPL18AP15-201ENST00000430258 517 ntBASIC11.24□□□□□ -0.61
COL6A5A8TX70 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 RN7SL564P-201ENST00000496309 250 ntBASIC11.24□□□□□ -0.61
COL6A5A8TX70 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 ANKRD26P1-203ENST00000569528 966 ntBASIC11.24□□□□□ -0.61
COL6A5A8TX70 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 MIR6819-201ENST00000622122 61 ntBASIC11.24□□□□□ -0.61
COL6A5A8TX70 RARS-210ENST00000626454 177 ntTSL 5 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 AC067931.2-201ENST00000623655 2003 ntBASIC11.24□□□□□ -0.61
COL6A5A8TX70 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 BRD7P5-201ENST00000299197 1822 ntBASIC11.24□□□□□ -0.61
COL6A5A8TX70 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 CICP13-201ENST00000422015 2789 ntBASIC11.24□□□□□ -0.61
COL6A5A8TX70 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 CLP1-202ENST00000525602 1392 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC11.24□□□□□ -0.61
COL6A5A8TX70 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
COL6A5A8TX70 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC11.24□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms