Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 COA5-202ENST00000409997 557 ntTSL 4 BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 AC015922.1-201ENST00000421102 1152 ntBASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 KRT18P43-201ENST00000469825 1281 ntBASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 YBX1P5-201ENST00000509441 847 ntBASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 AC025181.2-201ENST00000606994 802 ntBASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 MAP4K2-201ENST00000294066 7178 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 SIAE-201ENST00000263593 5583 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 RPS27L-201ENST00000330964 6434 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 OR4K13-203ENST00000641904 5684 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 SFRP1-202ENST00000379845 3873 ntTSL 2 BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CHMP1AQ9HD42 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 KREMEN1-202ENST00000400335 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 NUMA1-233ENST00000616538 6998 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 AC074338.1-201ENST00000416825 156 ntBASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 KRT18P64-201ENST00000434946 1219 ntBASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
CHMP1AQ9HD42 Z97205.2-201ENST00000564697 1639 ntBASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms