Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 ACE-204ENST00000428043 5120 ntTSL 2 BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC21.79■■□□□ 1.08
SCAPERQ9BY12 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 CICP23-201ENST00000605013 2741 ntBASIC21.78■■□□□ 1.08
SCAPERQ9BY12 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 BAX-205ENST00000391871 687 ntTSL 5 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 BPIFB5P-201ENST00000457066 1099 ntBASIC21.78■■□□□ 1.08
SCAPERQ9BY12 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 FOXN3-AS2-201ENST00000554071 1262 ntBASIC21.78■■□□□ 1.08
SCAPERQ9BY12 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 PHB-210ENST00000511832 1509 ntTSL 2 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SCAPERQ9BY12 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
SCAPERQ9BY12 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SCAPERQ9BY12 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
SCAPERQ9BY12 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC21.77■■□□□ 1.08
SCAPERQ9BY12 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
SCAPERQ9BY12 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SCAPERQ9BY12 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SCAPERQ9BY12 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC21.77■■□□□ 1.08
SCAPERQ9BY12 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SCAPERQ9BY12 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SCAPERQ9BY12 UROS-201ENST00000368774 744 ntTSL 2 BASIC21.77■■□□□ 1.08
SCAPERQ9BY12 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SCAPERQ9BY12 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SCAPERQ9BY12 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC21.77■■□□□ 1.08
SCAPERQ9BY12 AC006529.1-201ENST00000459978 637 ntBASIC21.77■■□□□ 1.08
SCAPERQ9BY12 RN7SL767P-201ENST00000493013 295 ntBASIC21.77■■□□□ 1.08
SCAPERQ9BY12 ALG1L3P-201ENST00000503331 765 ntBASIC21.77■■□□□ 1.08
SCAPERQ9BY12 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC21.77■■□□□ 1.08
SCAPERQ9BY12 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
SCAPERQ9BY12 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms