Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 CD9-202ENST00000382515 1229 ntTSL 5 BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 METTL26-203ENST00000397664 604 ntTSL 2 BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 AC079140.1-201ENST00000508039 487 ntBASIC9.21□□□□□ -0.94
LINC00643Q86TS7 KRT18P8-201ENST00000581937 1246 ntBASIC9.21□□□□□ -0.94
LINC00643Q86TS7 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 EPB41L1-212ENST00000441639 5967 ntTSL 5 BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 MUC20-205ENST00000447234 2589 ntAPPRIS P2 TSL 5 BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 GRIP2-205ENST00000621039 7752 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 SLC35A4-201ENST00000323146 3041 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 NMNAT2-201ENST00000287713 5663 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 NPC1L1-204ENST00000546276 4826 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 RN7SL832P-201ENST00000607781 1756 ntBASIC9.21□□□□□ -0.94
LINC00643Q86TS7 SLC39A13-204ENST00000524928 3553 ntTSL 2 BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 BDNF-218ENST00000533246 4000 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 SPECC1-206ENST00000395530 8133 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 IDO2-204ENST00000502986 2294 ntTSL 5 BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 MCM4-215ENST00000523944 4105 ntAPPRIS P1 TSL 2 BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 POLL-203ENST00000370162 2792 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 STRA6-204ENST00000423167 2776 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 ADAMTS10-211ENST00000597188 3749 ntAPPRIS P1 TSL 5 BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 AC125634.1-201ENST00000438758 1403 ntBASIC9.21□□□□□ -0.94
LINC00643Q86TS7 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 PPP1R12B-214ENST00000491336 2046 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
LINC00643Q86TS7 CAD-201ENST00000264705 7265 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 CNTNAP2-201ENST00000361727 9896 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 AC000120.1-201ENST00000414227 1589 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 PERP-201ENST00000421351 4290 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 CU639417.6-202ENST00000624872 3241 ntTSL 5 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 PKP4P1-201ENST00000426801 2158 ntBASIC9.2□□□□□ -0.94
LINC00643Q86TS7 SOX30-201ENST00000265007 3265 ntAPPRIS P4 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 PFKFB3-203ENST00000379775 4483 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 WAPL-206ENST00000618527 6152 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 AL157996.1-201ENST00000624684 2299 ntBASIC9.2□□□□□ -0.94
LINC00643Q86TS7 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 ARF3-201ENST00000256682 4105 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 CPNE4-201ENST00000429747 4184 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 ATG10-201ENST00000282185 3033 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 ADAMTS20-201ENST00000389420 6076 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 DDC-214ENST00000622873 1839 ntTSL 3 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 CHST6-201ENST00000332272 7957 ntAPPRIS P1 TSL 3 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 STK3-218ENST00000617590 2485 ntTSL 5 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 DNAJC3-202ENST00000602402 5591 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 RNF130-207ENST00000522208 9945 ntTSL 5 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 MYO9B-201ENST00000397274 7532 ntTSL 5 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 RETREG3-201ENST00000309428 3759 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 NAPB-201ENST00000377026 3837 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 AC142086.2-201ENST00000569753 217 ntBASIC9.2□□□□□ -0.94
LINC00643Q86TS7 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 AC097493.4-201ENST00000641197 219 ntBASIC9.2□□□□□ -0.94
LINC00643Q86TS7 CHGB-201ENST00000378961 2550 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 IQUB-202ENST00000466202 3296 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 SKP2-209ENST00000620197 3255 ntTSL 2 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 TMEM63B-201ENST00000259746 3318 ntAPPRIS P1 TSL 2 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 FMO1-203ENST00000402921 2003 ntTSL 2 BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 SLC25A25-203ENST00000373068 3431 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 LIMCH1-213ENST00000511496 3439 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
LINC00643Q86TS7 VPS13A-205ENST00000376636 11145 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms