Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 ETV2-208ENST00000621247 941 ntTSL 5 BASIC17.6■□□□□ 0.41
SYNE3Q6ZMZ3 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SYNE3Q6ZMZ3 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SYNE3Q6ZMZ3 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17.6■□□□□ 0.41
SYNE3Q6ZMZ3 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SYNE3Q6ZMZ3 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SYNE3Q6ZMZ3 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SYNE3Q6ZMZ3 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC17.6■□□□□ 0.41
SYNE3Q6ZMZ3 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC17.6■□□□□ 0.41
SYNE3Q6ZMZ3 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC17.6■□□□□ 0.41
SYNE3Q6ZMZ3 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC17.6■□□□□ 0.41
SYNE3Q6ZMZ3 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SYNE3Q6ZMZ3 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SYNE3Q6ZMZ3 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SYNE3Q6ZMZ3 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SYNE3Q6ZMZ3 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
SYNE3Q6ZMZ3 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SYNE3Q6ZMZ3 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 SALL4P5-201ENST00000419001 1760 ntBASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 RDX-218ENST00000544551 4117 ntTSL 2 BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 TLE1P1-201ENST00000422965 589 ntBASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 GNRHR2-203ENST00000581100 1187 ntBASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 AC004466.1-201ENST00000599515 1080 ntBASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 AL035252.4-201ENST00000624174 288 ntBASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SYNE3Q6ZMZ3 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SYNE3Q6ZMZ3 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC17.58■□□□□ 0.41
SYNE3Q6ZMZ3 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC17.58■□□□□ 0.41
SYNE3Q6ZMZ3 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SYNE3Q6ZMZ3 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SYNE3Q6ZMZ3 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SYNE3Q6ZMZ3 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SYNE3Q6ZMZ3 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC17.58■□□□□ 0.41
SYNE3Q6ZMZ3 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 RNA5SP486-201ENST00000515961 83 ntBASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 APOC4-201ENST00000591600 348 ntTSL 3 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 API5-203ENST00000455725 2257 ntTSL 2 BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SYNE3Q6ZMZ3 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SYNE3Q6ZMZ3 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms