Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 SLC4A5-206ENST00000423644 6185 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 AC136604.1-201ENST00000418535 575 ntBASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 MIR4745-201ENST00000577608 62 ntBASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 AL590560.3-201ENST00000623350 461 ntBASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 SLX4-201ENST00000294008 7307 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 GOLGA8VP-201ENST00000559009 1798 ntBASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 AL607033.1-201ENST00000623900 1599 ntBASIC14.39□□□□□ -0.11
PPP4R4Q6NUP7 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 AL133215.2-201ENST00000609242 977 ntBASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC14.38□□□□□ -0.11
PPP4R4Q6NUP7 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PPP4R4Q6NUP7 AL031595.1-201ENST00000623969 4709 ntBASIC14.37□□□□□ -0.11
PPP4R4Q6NUP7 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
PPP4R4Q6NUP7 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PPP4R4Q6NUP7 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC14.37□□□□□ -0.11
PPP4R4Q6NUP7 PTENP1-202ENST00000532280 3996 ntBASIC14.37□□□□□ -0.11
PPP4R4Q6NUP7 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms