Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
CDX1P47902 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CDX1P47902 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
CDX1P47902 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC12.29□□□□□ -0.44
CDX1P47902 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC12.29□□□□□ -0.44
CDX1P47902 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC12.29□□□□□ -0.44
CDX1P47902 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC12.29□□□□□ -0.44
CDX1P47902 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC12.29□□□□□ -0.44
CDX1P47902 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
CDX1P47902 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
CDX1P47902 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC12.29□□□□□ -0.44
CDX1P47902 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
CDX1P47902 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC12.29□□□□□ -0.44
CDX1P47902 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
CDX1P47902 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC12.29□□□□□ -0.44
CDX1P47902 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC12.29□□□□□ -0.44
CDX1P47902 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 PNKD-204ENST00000436005 978 ntTSL 5 BASIC12.29□□□□□ -0.44
CDX1P47902 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
CDX1P47902 TARDBPP1-201ENST00000442013 1203 ntBASIC12.29□□□□□ -0.44
CDX1P47902 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC12.29□□□□□ -0.44
CDX1P47902 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC12.29□□□□□ -0.44
CDX1P47902 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC12.29□□□□□ -0.44
CDX1P47902 SPDYE18-201ENST00000510091 1050 ntBASIC12.29□□□□□ -0.44
CDX1P47902 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC12.29□□□□□ -0.44
CDX1P47902 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC12.29□□□□□ -0.44
CDX1P47902 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC12.29□□□□□ -0.44
CDX1P47902 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
CDX1P47902 CR383656.12-201ENST00000549567 513 ntBASIC12.29□□□□□ -0.44
CDX1P47902 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC12.29□□□□□ -0.44
CDX1P47902 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
CDX1P47902 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC12.29□□□□□ -0.44
CDX1P47902 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC12.29□□□□□ -0.44
CDX1P47902 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC12.29□□□□□ -0.44
CDX1P47902 AL118506.1-201ENST00000601296 3082 ntBASIC12.29□□□□□ -0.44
CDX1P47902 C5AR1-201ENST00000355085 2311 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC12.29□□□□□ -0.44
CDX1P47902 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC12.29□□□□□ -0.44
CDX1P47902 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 GRN-214ENST00000589265 1632 ntTSL 5 BASIC12.29□□□□□ -0.44
CDX1P47902 DMBT1P1-203ENST00000636837 4628 ntBASIC12.29□□□□□ -0.44
CDX1P47902 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC12.29□□□□□ -0.44
CDX1P47902 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC12.29□□□□□ -0.44
CDX1P47902 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
CDX1P47902 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CDX1P47902 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC12.29□□□□□ -0.44
CDX1P47902 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
CDX1P47902 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC12.28□□□□□ -0.44
CDX1P47902 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CDX1P47902 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
CDX1P47902 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC12.28□□□□□ -0.44
CDX1P47902 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CDX1P47902 TGM1-201ENST00000206765 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CDX1P47902 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
CDX1P47902 AC098614.1-201ENST00000368528 745 ntBASIC12.28□□□□□ -0.44
CDX1P47902 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC12.28□□□□□ -0.44
CDX1P47902 AC136604.1-201ENST00000418535 575 ntBASIC12.28□□□□□ -0.44
CDX1P47902 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC12.28□□□□□ -0.44
CDX1P47902 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
CDX1P47902 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC12.28□□□□□ -0.44
CDX1P47902 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
CDX1P47902 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC12.28□□□□□ -0.44
CDX1P47902 AP005018.1-201ENST00000525475 301 ntBASIC12.28□□□□□ -0.44
CDX1P47902 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC12.28□□□□□ -0.44
CDX1P47902 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC12.28□□□□□ -0.44
CDX1P47902 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC12.28□□□□□ -0.44
CDX1P47902 AC023310.3-201ENST00000557027 670 ntBASIC12.28□□□□□ -0.44
CDX1P47902 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC12.28□□□□□ -0.44
CDX1P47902 AC100756.1-201ENST00000562736 682 ntBASIC12.28□□□□□ -0.44
CDX1P47902 RARRES2P5-201ENST00000564013 466 ntBASIC12.28□□□□□ -0.44
CDX1P47902 AC138749.3-201ENST00000567691 622 ntBASIC12.28□□□□□ -0.44
CDX1P47902 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC12.28□□□□□ -0.44
CDX1P47902 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC12.28□□□□□ -0.44
CDX1P47902 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC12.28□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms